- vom 3.3.2022
Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing
Willenbücher, Katharina ; Wibberg, Daniel ; Huang, Liren ; Conrady, Marius ; Ramm, Patrice ; Gätcke, Julia ; Busche, Tobias ; Brandt, Christian ; Szewzyk, Ulrich ; Schlüter, Andreas ; Barrero Canosa, Jimena ; Maus, IrenaIn: Microorganisms, Jg. 10 H. 2Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
Wibberg, Daniel ; Genzel, Franziska ; Verwaaijen, Bart ; Blom, Jochen ; Rupp, Oliver ; Goesmann, Alexander ; Zrenner, Rita ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Journal of Fungi, Jg. 7 H. 10Establishment of a near-contiguous genome sequence of the citric acid producing yeast DSM 3286 with resolution of rDNA clusters and telomeres
Luttermann, Tobias ; Rückert, Christian ; Wibberg, Daniel ; Busche, Tobias ; Schwarzhans, Jan-Philipp ; Friehs, Karl ; Kalinowski, JörnIn: NAR Genomics and Bioinformatics, Jg. 3 H. 4, S. 13 ff.
- vom 14.7.2021
Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteri
Klein, Benjamin ; Wibberg, Daniel ; Hallmann, ArminIn: BMC Biology, Jg. 15 H. 1The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Maus, Irena ; Tubbesing, Tom Jonas ; Wibberg, Daniel ; Heyer, Robert ; Hassa, Julia ; Tomazetto, Geizecler ; Huang, Liren ; Bunk, Boyke ; Spröer, Cathrin ; Benndorf, Dirk ; Zverlov, Vladimir ; Pühler, Alfred ; Klocke, Michael ; Sczyrba, Alexander ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 12The Rhizoctonia solani AG1-IB (isolate 7/3/14) transcriptome during interaction with the host plant lettuce (Lactuca sativa L.)
Verwaaijen, Bart ; Wibberg, Daniel ; Kröber, Magdalena ; Winkler, Anika ; Zrenner, Rita ; Bednarz, Hanna ; Niehaus, Karsten ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: PLOS ONE, Jg. 12 H. 5The Peptidoglycan Biosynthesis Gene murC in Frankia: Actinorhizal vs. Plant Type.
Berckx, Fede ; Wibberg, Daniel ; Kalinowski, Jörn ; Pawlowski, KatharinaIn: Genes, Jg. 11 H. 4Proteiniphilum saccharofermentans str. M3/6 T isolated from a laboratory biogas reactor is versatile in polysaccharide and oligopeptide utilization as [...]
Tomazetto, Geizecler ; Hahnke, Sarah ; Wibberg, Daniel ; Pühler, Alfred ; Klocke, Michael ; Schlüter, AndreasIn: Biotechnology Reports, Jg. 18Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
Blifernez-Klassen, Olga ; Klassen, Viktor ; Wibberg, Daniel ; Cebeci, Enis ; Henke, Christian ; Rückert, Christian ; Chaudhari, Swapnil ; Rupp, Oliver ; Blom, Jochen ; Winkler, Anika ; Al-Dilaimi, Arwa ; Goesmann, Alexander ; Sczyrba, Alexander ; Kalinowski, Jörn ; Bräutigam, Andrea ; Kruse, OlafIn: Scientific Reports, Jg. 11 H. 1Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing
Schwarzhans, Jan Philipp ; Wibberg, Daniel ; Winkler, Anika ; Luttermann, Tobias ; Kalinowski, Jörn ; Friehs, KarlIn: Scientific Reports, Jg. 6 H. 1Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector opti [...]
Schwarzhans, Jan Philipp ; Wibberg, Daniel ; Winkler, Anika ; Luttermann, Tobias ; Kalinowski, Jörn ; Friehs, KarlIn: Microbial Cell Factories, Jg. 15 H. 1Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed [...]
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Jg. 15 H. 1Highly efficient methane generation from untreated microalgae biomass
Klassen, Viktor ; Blifernez-Klassen, Olga ; Wibberg, Daniel ; Winkler, Anika ; Kalinowski, Jörn ; Posten, Clemens ; Kruse, OlafIn: Biotechnology for Biofuels, Jg. 10 H. 1
- vom 13.7.2021
Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Jg. 10 H. 1Genomic and transcriptomic investigation of the physiological response of the methylotroph Bacillus methanolicus to 5-aminovalerate
Haupka, Carsten ; Fernandes de Brito, Luciana ; Busche, Tobias ; Wibberg, Daniel ; Wendisch, Volker F.In: Frontiers in Microbiology, Jg. 12Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo, Gonzalo Arturo ; Wibberg, Daniel ; Winkler, Anika ; Ormeño-Orrillo, Ernesto ; Martínez-Romero, Esperanza ; Niehaus, Karsten ; Pühler, Alfred ; Kalinowski, Jörn ; Lagares, Antonio ; Schlüter, Andreas ; Pistorio, MarianoIn: Genome Announcements, Jg. 5 H. 4, S. e01513-16Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38
Wibberg, Daniel ; Tielen, Petra ; Blom, Jochen ; Rosin, Nathalie ; Schobert, Max ; Tüpker, Reinhilde ; Schatschneider, Sarah ; Spilker, Dominik ; Albersmeier, Andreas ; Goesmann, Alexander ; Vorhölter, Frank-Jörg ; Pühler, Alfred ; Jahn, DieterIn: Genome announcements, Jg. 2 H. 2Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas [...]
Hassa, Julia ; Wibberg, Daniel ; Maus, Irena ; Pühler, Alfred ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 1Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole [...]
Kröber, Magdalena ; Wibberg, Daniel ; Grosch, Rita ; Eikmeyer, Felix Gregor ; Verwaaijen, Bart ; Chowdhury, Soumitra P. ; Hartmann, Anton ; Pühler, Alfred ; Schlüter, AndreasIn: Frontiers in Microbiology, Jg. 5Draft genome sequence of Streptomyces tunisialbus DSM 105760T.
Ayed, Ameni ; Wibberg, Daniel ; Zendah El Euch, Imene ; Frese, Marcel ; Limam, Ferid ; Sewald, NorbertIn: Archives of microbiology, Jg. 202, S. 2013-2017