The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick ; Szczepanowski, Rafael ; Rückert, Christian ; Kalinowski, Jörn ; Klein, Andreas ; Selber, Klaus ; Wehmeier, Udo F. ; Stoye, Jens ; Pühler, AlfredIn: BMC Genomics, Jg. 13 H. 1Computing the family-free DCJ similarity
Rubert, Diego ; Hoshino, Edna A. ; Dias Vieira Braga, Marília ; Stoye, Jens ; Martinez, Fábio Henrique ViduaniIn: BMC Bioinformatics, Jg. 19 H. Suppl. 6Contig selection in physical mapping
Heber, Steffen ; Stoye, Jens ; Frohme, Marcus ; Hoheisel, Jörg ; Vingron, MartinIn: Journal of Computational Biology, Jg. 7 H. 3-4, S. 395-408Correction: Benchmarking tools for the alignment of functional noncoding DNA
Pollard, Daniel A. ; Bergman, Casey M. ; Stoye, Jens ; Celniker, Susan E. ; Eisen, Michael B.In: BMC Bioinformatics, Jg. 5 H. 1Counting Suffix Arrays and Strings
Schürmann, Klaus-Bernd ; Stoye, JensDetecting High Scoring Local Alignments in Pangenome Graphs
Schulz, Tizian ; Wittler, Roland ; Rahmann, Sven ; Hach, Faraz ; Stoye, JensIn: Bioinformatics, Jg. 37 H. 16, S. 2266-2274Divide-and-conquer multiple alignment with segment-based constraints
Sammeth, Michael ; Morgenstern, Burkhard ; Stoye, JensIn: BIOINFORMATICS, Jg. 19 H. Suppl 2, S. ii189-ii195Efficient implementation of lazy suffix trees
Giegerich, Robert ; Kurtz, Stefan ; Stoye, JensIn: SOFTWARE-PRACTICE & EXPERIENCE, Jg. 33 H. 11, S. 1035-1049Finding all maximal perfect haplotype blocks in linear time
Alanko, Jarno ; Bannai, Hideo ; Cazaux, Bastien ; Peterlongo, Pierre ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 15Flexible protein annotation with sequence- and secondary structure information
Bannert, Constantin2008Gene family assignment-free comparative genomics
Dörr, Daniel ; Thévenin, Annelyse ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. Suppl 19: Proc. of RECOMB-CG 2012