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Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032
Mentz, Almut ; Neshat, Armin ; Pfeifer-Sancar, Katharina ; Pühler, Alfred ; Rückert, Christian ; Kalinowski, Jörn
In: BMC Genomics, Jg. 14 H. 1
CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko ; Baumbach, Jan ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Kalinowski, Jörn ; Oehm, Sebastian ; Pühler, Alfred ; Rahmann, Sven ; Weile, Jochen ; Goesmann, Alexander
In: BMC Systems Biology, Jg. 1 H. 1
Data Analysis for the COVID-19 Research: Contributions of the German Network of Bioinformatics Infrastructure
Pühler, Alfred (Hrsg.)
2021
de.NBI Cloud federation through ELIXIR AAI
Belmann, Peter ; Fischer, Björn ; Krüger, Jan ; Procházka, Michal ; Rasche, Helena ; Prinz, Manuel ; Hanussek, Maximilian ; Lang, Martin ; Bartusch, Felix ; Gläßle, Benjamin ; Krüger, Jens ; Pühler, Alfred ; Sczyrba, Alexander
In: F1000Research, Jg. 8
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, Alexander
In: GigaScience, Jg. 4 H. 1
The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum
Gaigalat, Lars ; Schlüter, Jan-Philip ; Hartmann, Michelle ; Mormann, Sascha ; Tauch, Andreas ; Pühler, Alfred ; Kalinowski, Jörn
In: BMC Molecular Biology, Jg. 8 H. 1
Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
Eikmeyer, Felix Gregor ; Rademacher, Antje ; Hanreich, Angelika ; Hennig, Magdalena ; Jaenicke, Sebastian ; Maus, Irena ; Wibberg, Daniel ; Zakrzewski, Martha ; Pühler, Alfred ; Klocke, Michael ; Schlüter, Andreas
In: Biotechnology for Biofuels, Jg. 6 H. 1
Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates
Wibberg, Daniel ; Rupp, Oliver ; Blom, Jochen ; Jelonek, Lukas ; Kröber, Magdalena ; Verwaaijen, Bart ; Goesmann, Alexander ; Albaum, Stefan ; Grosch, Rita ; Pühler, Alfred ; Schlüter, Andreas
In: Plos One, Jg. 10 H. 12
Development of computational methods for the analysis of metagenome and metatranscriptome data
Zakrzewski, Martha
2012
Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, Andreas
In: Genome Announcements, Jg. 4 H. 3, S. e00609-16
The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum
Brune, Iris ; Werner, Hendrikje ; Hüser, Andrea T. ; Kalinowski, Jörn ; Pühler, Alfred ; Tauch, Andreas
In: BMC Genomics, Jg. 7 H. 1
The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules
Rückert, Christian ; Milse, Johanna ; Albersmeier, Andreas ; Koch, Daniel J. ; Pühler, Alfred ; Kalinowski, Jörn
In: BMC GENOMICS, Jg. 9 H. 1, S. 483 ff.
EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom, Jochen ; Albaum, Stefan ; Doppmeier, Daniel ; Pühler, Alfred ; Vorhölter, Frank-Jörg ; Zakrzewski, Martha ; Goesmann, Alexander
In: BMC Bioinformatics, Jg. 10 H. 1
Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes
Nelkner, Johanna ; Henke, Christian ; Lin, Timo Wentong ; Pätzold, Wiebke ; Hassa, Julia ; Jaenicke, Sebastian ; Grosch, Rita ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, Andreas
In: Genes, Jg. 10 H. 6
Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing
Kröber, Magdalena ; Wibberg, Daniel ; Grosch, Rita ; Eikmeyer, Felix Gregor ; Verwaaijen, Bart ; Chowdhury, Soumitra P. ; Hartmann, Anton ; Pühler, Alfred ; Schlüter, Andreas
In: Frontiers in Microbiology, Jg. 5
EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, Alexander
In: BMC Bioinformatics, Jg. 10 H. 1
Engineering and characterization of Xanthomonas campestris pv. campestris towards an enhanced production of the exopolysaccharide xanthan
Steffens, Tim
2017
Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110
Schaffert, Lena ; März, Camilla ; Burkhardt, Lisa ; Droste, Julian ; Brandt, David ; Busche, Tobias ; Rosen, Winfried ; Schneiker-Bekel, Susanne ; Persicke, Marcus ; Pühler, Alfred ; Kalinowski, Jörn
In: Microbial Cell Factories, Jg. 18 H. 1
Exopolysaccharide Characterization of Rhizobium favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa
Castellani, Lucas G. ; Luchetti, Abril ; Nilsson, Juliet F. ; Pérez-Giménez, Julieta ; Wegener, Caren ; Schlüter, Andreas ; Pühler, Alfred ; Lagares, Antonio ; Brom, Susana ; Pistorio, Mariano ; Niehaus, Karsten ; Torres Tejerizo, Gonzalo A.
In: Frontiers in Plant Science, Jg. 12
ExoS/ChvI Two-Component Signal-Transduction System Activated in the Absence of Bacterial Phosphatidylcholine
Geiger, Otto ; Sohlenkamp, Christian ; Vera-Cruz, Diana ; Medeot, Daniela B ; Martinez-Aguilar, Lourdes ; Sahonero-Canavesi, Diana X ; Weidner, Stefan ; Pühler, Alfred ; Lopez-Lara, Isabel M
In: Frontiers in Plant Science, Jg. 12
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79 Titel in Klassifikation (DDC)
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Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032

CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data

Data Analysis for the COVID-19 Research: Contributions of the German Network of Bioinformatics Infrastructure

de.NBI Cloud federation through ELIXIR AAI

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant

The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum

Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms

Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 and AG8 Isolates

Development of computational methods for the analysis of metagenome and metatranscriptome data

Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor

The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum

The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules

EDGAR: a software framework for the comparative analysis of prokaryotic genomes

Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted Plant-Beneficial Genes

Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole metagenome sequencing

EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data

Engineering and characterization of Xanthomonas campestris pv. campestris towards an enhanced production of the exopolysaccharide xanthan

Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110

Exopolysaccharide Characterization of Rhizobium favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa

ExoS/ChvI Two-Component Signal-Transduction System Activated in the Absence of Bacterial Phosphatidylcholine

79 Titel in Klassifikation (DDC) KlassifikationSchliessenFilter2

79 Titel in Klassifikation (DDC)
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