AGenDA: gene prediction by cross-species sequence comparison
Taher, L ; Rinner, O ; Garg, S ; Sczyrba, Alexander ; Morgenstern, BIn: Nucleic Acids Research, Vol. 32 Issue Web Server, page W305-W308AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization
Langenkämper, Daniel ; Goesmann, Alexander ; Nattkemper, Tim WilhelmIn: BMC Bioinformatics, Vol. 15 Issue 1An Expressed Sequence Tag Analysis of the Intertidal Brown Seaweeds Fucus serratus (L.) and F. vesiculosus (L.) (Heterokontophyta, Phaeophyceae) in Response to Abiotic Stressors
Pearson, Gareth A. ; Hoarau, Galice ; Lago-Leston, Asuncion ; Coyer, James A. ; Kube, Michael ; Reinhardt, Richard ; Henckel, Kolja ; Serrao, Ester T. A. ; Corre, Erwan ; Olson, Jeanine L.In: Marine Biotechnology, Vol. 12 Issue 2, page 195-213Approximating the DCJ distance of balanced genomes in linear time
Rubert, Diego ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, Jens ; Martinez, Fábio Henrique ViduaniIn: Algorithms for Molecular Biology, Vol. 12 Issue 1Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
Holley, Guillaume ; Wittler, Roland ; Stoye, JensIn: Algorithms for Molecular Biology, Vol. 11 Issue 1Chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set
Pucker, Boas ; Holtgräwe, Daniela ; Stadermann, Kai Bernd ; Frey, Katharina ; Huettel, Bruno ; Reinhardt, Richard ; Weisshaar, BerndIn: PLoS One, Vol. 14 Issue 5Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data
Schilbert, Hanna ; Rempel, Andreas ; Pucker, BoasIn: Plants, Vol. 9 Issue 4The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick ; Szczepanowski, Rafael ; Rückert, Christian ; Kalinowski, Jörn ; Klein, Andreas ; Selber, Klaus ; Wehmeier, Udo F. ; Stoye, Jens ; Pühler, AlfredIn: BMC Genomics, Vol. 13 Issue 1Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative Genomics and Transcriptomics
Nelkner, Johanna ; Tejerizo, Gonzalo Torres ; Hassa, Julia ; Lin, Timo Wentong ; Witte, Julian ; Verwaaijen, Bart ; Winkler, Anika ; Bunk, Boyke ; Spröer, Cathrin ; Overmann, Jörg ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Genes, Vol. 10 Issue 8Genomics and Transcriptomics Advance in Plant Sciences
Pucker, Boas ; Schilbert, Hanna ; Singh, Sudhir P. (Ed.) ; Upadhyay, Santosh Kumar (Ed.) ; Pandey, Ashutosh (Ed.) ; Kumar, Sunil (Ed.)Multiple Occurrences of a 168-Nucleotide Deletion in SARS-CoV-2 ORF8, Unnoticed by Standard Amplicon Sequencing and Variant Calling Pipelines
Brandt, David ; Simunovic, Marina ; Busche, Tobias ; Haak, Markus ; Belmann, Peter ; Jünemann, Sebastian ; Schulz, Tizian ; Klages, Levin Joe ; Vinke, Svenja ; Beckstette, Michael ; Pohl, Ehmke ; Scherer, Christiane ; Sczyrba, Alexander ; Kalinowski, JörnIn: Viruses, Vol. 13 Issue 9Natural family-free genomic distance.
Rubert, Diego P ; Martinez, Fabio V ; Dias Vieira Braga, MaríliaIn: Algorithms for molecular biology : AMB, Vol. 16 Issue 1On the Similarity of Sets of Permutations and its Applications to Genome Comparison
Bergeron, Anne ; Stoye, JensRAD Sequencing and a Hybrid Antarctic Fur Seal Genome Assembly Reveal Rapidly Decaying Linkage Disequilibrium, Global Population Structure and Evidence for Inbreeding
Humble, Emily ; Dasmahapatra, Kanchon K. ; Martinez-Barrio, Alvaro ; Gregório, Inês ; Forcada, Jaume ; Polikeit, Ann-Christin ; Goldsworthy, Simon D. ; Goebel, Michael E. ; Kalinowski, Jörn ; Wolf, Jochen B. W. ; Hoffman, JosephIn: G3: Genes|Genomes|Genetics, Vol. 8 Issue 8, page 2709-2722Reference-based QUantification Of gene Dispensability (QUOD)
Sielemann, Katharina ; Weisshaar, Bernd ; Pucker, BoasIn: Plant Methods, Vol. 17 Issue 1