AKE - The Accelerated k-mer Exploration Web-Tool for Rapid Taxonomic Classification and Visualization
Langenkämper, Daniel ; Goesmann, Alexander ; Nattkemper, Tim WilhelmIn: BMC Bioinformatics, Jg. 15 H. 1ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and [...]
Kessler, Nikolas ; Walter, Frederik ; Persicke, Marcus ; Albaum, Stefan ; Kalinowski, Jörn ; Goesmann, Alexander ; Niehaus, Karsten ; Nattkemper, Tim WilhelmIn: PLoS ONE, Jg. 9 H. 11Complete Chloroplast and Mitochondrial Genome Sequences of the Hydrocarbon Oil-Producing Green MicroalgaBotryococcus brauniiRace B (Showa)
Blifernez-Klassen, Olga ; Wibberg, Daniel ; Winkler, Anika ; Blom, Jochen ; Goesmann, Alexander ; Kalinowski, Jörn ; Kruse, OlafIn: Genome Announcements, Jg. 4 H. 3Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke, Sebastian ; Bunk, Boyke ; Wibberg, Daniel ; Spröer, Cathrin ; Hersemann, Lena ; Blom, Jochen ; Winkler, Anika ; Schatschneider, Sarah ; Albaum, Stefan ; Kölliker, Roland ; Goesmann, Alexander ; Pühler, Alfred ; Overmann, Jörg ; Vorhölter, Frank-JörgIn: Genome Announcements, Jg. 4 H. 6Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii
Toepel, Jörg ; Albaum, Stefan ; Arvidsson, S. ; Goesmann, Alexander ; La Russa, Marco ; Rogge, Kristin ; Kruse, OlafIn: BMC Genomics, Jg. 12 H. 1De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite
Pauli, Martina ; Chakarov, Nayden ; Rupp, Oliver ; Kalinowski, Jörn ; Goesmann, Alexander ; Sorenson, Michael ; Krüger, Oliver ; Hoffman, JosephIn: BMC Genomics, Jg. 16 H. 1Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 [...]
Wibberg, Daniel ; Rupp, Oliver ; Blom, Jochen ; Jelonek, Lukas ; Kröber, Magdalena ; Verwaaijen, Bart ; Goesmann, Alexander ; Albaum, Stefan ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Plos One, Jg. 10 H. 12Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38
Wibberg, Daniel ; Tielen, Petra ; Blom, Jochen ; Rosin, Nathalie ; Schobert, Max ; Tüpker, Reinhilde ; Schatschneider, Sarah ; Spilker, Dominik ; Albersmeier, Andreas ; Goesmann, Alexander ; Vorhölter, Frank-Jörg ; Pühler, Alfred ; Jahn, DieterIn: Genome announcements, Jg. 2 H. 2A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum, Stefan ; Hahne, H. ; Otto, A. ; Haußmann, U. ; Becher, D. ; Poetsch, A. ; Goesmann, Alexander ; Nattkemper, Tim WilhelmIn: Proteome Science, Jg. 9 H. 1Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform
Kessler, Nikolas ; Bonte, Anja ; Albaum, Stefan ; Mäder, Paul ; Messmer, Monika ; Goesmann, Alexander ; Niehaus, Karsten ; Langenkämper, Georg ; Nattkemper, Tim WilhelmIn: Frontiers in Bioinformatics and Computational Biology, Jg. 3Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
Yu, Jia ; Blom, Jochen ; Sczyrba, Alexander ; Goesmann, AlexanderIn: Journal of Biotechnology, Jg. 257, S. 58-60ReadXplorer 2 - detailed read mapping analysis and visualization from one single source
Hilker, Rolf ; Stadermann, Kai Bernd ; Schwengers, Oliver ; Anisiforov, Evgeny ; Jaenicke, Sebastian ; Weisshaar, Bernd ; Zimmermann, Tobias ; Goesmann, AlexanderIn: Bioinformatics, Jg. 32 H. 24, S. 3702-3708Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel [...]
Bogen, Christian ; Al-Dilaimi, Arwa ; Albersmeier, Andreas ; Wichmann, Julian ; Grundmann, Michael ; Rupp, Oliver ; Lauersen, Kyle J. ; Blifernez-Klassen, Olga ; Kalinowski, Jörn ; Goesmann, Alexander ; Mussgnug, Jan H. ; Kruse, OlafIn: BMC Genomics, Jg. 14 H. 1Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol [...]
Jaeger, Daniel ; Winkler, Anika ; Mussgnug, Jan H. ; Kalinowski, Jörn ; Goesmann, Alexander ; Kruse, OlafIn: Biotechnology for Biofuels, Jg. 10 H. 1