BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-859EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom, Jochen ; Albaum, Stefan ; Doppmeier, Daniel ; Pühler, Alfred ; Vorhölter, Frank-Jörg ; Zakrzewski, Martha ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 1Tight linkage of ginA and a putative regulatory gene in Rhizobium leguminosarum
Colonna-Romano, S. ; Riccio, A. ; Guida, M. ; Defez, R. ; Lamberti, A. ; Iaccarino, M. ; Arnold, Walter ; Priefer, Ursula B. ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 15 H. 5, S. 1951-1964EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 1A maltose-regulated large genomic region is activated by the transcriptional regulator MalT in Actinoplanes sp. SE50/110
Droste, Julian ; Kulisch, Martin ; Wolf, Timo ; Schaffert, Lena ; Schneiker-Bekel, Susanne ; Pühler, Alfred ; Kalinowski, JörnIn: Applied microbiology and biotechnology, Jg. 104, S. 9283–9294 ff.The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase.
Droste, Julian ; Ortseifen, Vera ; Schaffert, Lena ; Persicke, Marcus ; Schneiker-Bekel, Susanne ; Pühler, Alfred ; Kalinowski, JörnIn: BMC genomics, Jg. 21Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ance [...]
López, J. L. ; Lozano, M. J. ; Lagares, A. ; Fabre, M. L. ; Draghi, W. O. ; Del Papa, M. F. ; Pistorio, M. ; Becker, A. ; Wibberg, Daniel ; Schlüter, Andreas ; Pühler, Alfred ; Blom, J. ; Goesmann, A. ; Lagares, A.In: mBio, Jg. 10 H. 3Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed [...]
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Jg. 15 H. 1CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko ; Baumbach, Jan ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Kalinowski, Jörn ; Oehm, Sebastian ; Pühler, Alfred ; Rahmann, Sven ; Weile, Jochen ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 1 H. 1Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110
Schaffert, Lena ; März, Camilla ; Burkhardt, Lisa ; Droste, Julian ; Brandt, David ; Busche, Tobias ; Rosen, Winfried ; Schneiker-Bekel, Susanne ; Persicke, Marcus ; Pühler, Alfred ; Kalinowski, JörnIn: Microbial Cell Factories, Jg. 18 H. 1Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110
Schaffert, Lena ; Schneiker-Bekel, Susanne ; Gierhake, Jessica ; Droste, Julian ; Persicke, Marcus ; Rosen, Winfried ; Pühler, Alfred ; Kalinowski, JörnIn: Applied Microbiology and Biotechnology, Jg. 104, S. 5395–5408 ff.The genetic organization and evolution of the broad host range mercury resistance plasmid pSB102 isolated from a microbial population residing in the [...]
Schneiker-Bekel, Susanne ; Keller, Mathias ; Dröge, Marcus ; Lanka, Erich ; Pühler, Alfred ; Selbitschka, WernerIn: Nucleic Acids Res, Jg. 29 H. 24, S. 5169-5181The MalR type regulator AcrC is a transcriptional repressor of acarbose biosynthetic genes in Actinoplanes sp. SE50/110
Wolf, Timo ; Droste, Julian ; Gren, Tetiana ; Ortseifen, Vera ; Schneiker-Bekel, Susanne ; Zemke, Till ; Pühler, Alfred ; Kalinowski, JörnIn: BMC Genomics, Jg. 18 H. 1