- vom 3.3.2022
Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
Wibberg, Daniel ; Genzel, Franziska ; Verwaaijen, Bart ; Blom, Jochen ; Rupp, Oliver ; Goesmann, Alexander ; Zrenner, Rita ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Journal of Fungi, Jg. 7 H. 10
- vom 14.7.2021
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach, Wolfgang ; Jünemann, Sebastian ; Tille, Felix ; Goesmann, Alexander ; Stoye, JensIn: BMC Bioinformatics, Jg. 10 H. 1, S. 430 ff.Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum [...]
Neuweger, Heiko ; Persicke, Marcus ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Winnebald, Jörn ; Schneider, Jessica ; Kalinowski, Jörn ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 3 H. 1TRUNCATULIX - a data warehouse for the legume community
Henckel, Kolja ; Runte, Kai J. ; Bekel, Thomas ; Dondrup, Michael ; Jakobi, Tobias ; Küster, Helge ; Goesmann, AlexanderIn: BMC Plant Biology, Jg. 9 H. 1, S. 19 ff.Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula
Hohnjec, Natalija ; Henckel, Kolja ; Bekel, Thomas ; Gouzy, Jerome ; Dondrup, Michael ; Goesmann, Alexander ; Küster, HelgeIn: FUNCTIONAL PLANT BIOLOGY, Jg. 33 H. 8, S. 737-748Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format
Krawczyk, Justina ; Goesmann, Alexander ; Nolte, Ralf ; Werber, Martin ; Weisshaar, BerndIn: Source Code for Biology and Medicine, Jg. 4 H. 1, S. 4 ff.Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol [...]
Jaeger, Daniel ; Winkler, Anika ; Mussgnug, Jan H. ; Kalinowski, Jörn ; Goesmann, Alexander ; Kruse, OlafIn: Biotechnology for Biofuels, Jg. 10 H. 1The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes
Overbeek, Ross ; Begley, Tadhg ; Butler, Ralph M. ; Choudhuri, Jomuna V. ; Chuang, Han-Yu ; Cohoon, Matthew ; Crécy-Lagard, Valérie de ; Diaz, Naryttza N. ; Disz, Terry ; Edwards, Robert ; Fonstein, Michael ; Frank, Ed D. ; Gerdes, Svetlana ; Glass, Elizabeth M. ; Goesmann, Alexander ; Hanson, Andrew ; Iwata-Reuyl, Dirk ; Jensen, Roy ; Jamshidi, Neema ; Krause, Lutz [...]In: Nucleic Acids Research, Jg. 33 H. 17, S. 5691-5702The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 1The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance [...]
Tauch, Andreas ; Schlüter, Andreas ; Bischoff, N. ; Goesmann, Alexander ; Meyer, F. ; Pühler, AlfredIn: Molecular Genetics and Genomics, Jg. 268 H. 5, S. 570-584TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Diaz, Naryttza N. ; Krause, Lutz ; Goesmann, Alexander ; Niehaus, Karsten ; Nattkemper, Tim WilhelmIn: BMC Bioinformatics, Jg. 10 H. 1, S. 56 ff.Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8
Farnbacher, Max ; Jahns, Thomas ; Willrodt, Dirk ; Daniel, Rolf ; Haas, Rainer ; Goesmann, Alexander ; Kurtz, Stefan ; Rieder, GabrieleIn: BMC Genomics, Jg. 11 H. 1Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel [...]
Bogen, Christian ; Al-Dilaimi, Arwa ; Albersmeier, Andreas ; Wichmann, Julian ; Grundmann, Michael ; Rupp, Oliver ; Lauersen, Kyle J. ; Blifernez-Klassen, Olga ; Kalinowski, Jörn ; Goesmann, Alexander ; Mussgnug, Jan H. ; Kruse, OlafIn: BMC Genomics, Jg. 14 H. 1ReadXplorer 2 - detailed read mapping analysis and visualization from one single source
Hilker, Rolf ; Stadermann, Kai Bernd ; Schwengers, Oliver ; Anisiforov, Evgeny ; Jaenicke, Sebastian ; Weisshaar, Bernd ; Zimmermann, Tobias ; Goesmann, AlexanderIn: Bioinformatics, Jg. 32 H. 24, S. 3702-3708Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
Yu, Jia ; Blom, Jochen ; Sczyrba, Alexander ; Goesmann, AlexanderIn: Journal of Biotechnology, Jg. 257, S. 58-60Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
Blifernez-Klassen, Olga ; Klassen, Viktor ; Wibberg, Daniel ; Cebeci, Enis ; Henke, Christian ; Rückert, Christian ; Chaudhari, Swapnil ; Rupp, Oliver ; Blom, Jochen ; Winkler, Anika ; Al-Dilaimi, Arwa ; Goesmann, Alexander ; Sczyrba, Alexander ; Kalinowski, Jörn ; Bräutigam, Andrea ; Kruse, OlafIn: Scientific Reports, Jg. 11 H. 1Phylogenetic classification of short environmental DNA fragments
Krause, Lutz ; Diaz, Naryttza N. ; Goesmann, Alexander ; Kelley, Scott ; Nattkemper, Tim Wilhelm ; Rohwer, Forest ; Edwards, Robert A. ; Stoye, JensIn: Nucleic Acids Research, Jg. 36 H. 7, S. 2230-2239MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.
Henckel, Kolja ; Küster, Helge ; Stutz, Leonhard ; Goesmann, AlexanderIn: BMC Research Notes, Jg. 3 H. 1Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform
Kessler, Nikolas ; Bonte, Anja ; Albaum, Stefan ; Mäder, Paul ; Messmer, Monika ; Goesmann, Alexander ; Niehaus, Karsten ; Langenkämper, Georg ; Nattkemper, Tim WilhelmIn: Frontiers in Bioinformatics and Computational Biology, Jg. 3