On the family-free DCJ distance and similarity
Viduani Martinez, Fábio Henrique ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 10 H. 12015On the Inversion-Indel Distance
Willing, Eyla ; Zaccaria, Simone ; Dias Vieira Braga, Marília ; Stoye, JensIn: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013On the Similarity of Sets of Permutations and its Applications to Genome Comparison
Bergeron, Anne ; Stoye, Jens2003On the weight of indels in genomic distances
Dias Vieira Braga, Marília ; Machado, Raphael ; Ribeiro, Leonardo C. ; Stoye, JensIn: BMC Bioinformatics, Jg. 12 H. Suppl 9: RECOMB-CG 20112011Orthology Detection Combining Clustering and Synteny for Very Large Datasets
Lechner, Marcus ; Hernandez-Rosales, Maribel ; Dörr, Daniel ; Wieseke, Nicolas ; Thévenin, Annelyse ; Stoye, Jens ; Hartmann, Roland K. ; Prohaska, Sonja J. ; Stadler, Peter F.In: PLoS ONE, Jg. 9 H. 82014Phylogenetic classification of short environmental DNA fragments
Krause, Lutz ; Diaz, Naryttza N. ; Goesmann, Alexander ; Kelley, Scott ; Nattkemper, Tim Wilhelm ; Rohwer, Forest ; Edwards, Robert A. ; Stoye, JensIn: Nucleic Acids Research, Jg. 36 H. 7, S. 2230-22392008Phylogenetic Comparative Assembly
Husemann, Peter ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 5 H. 12010QAlign: quality-based multiple alignments with dynamic phylogenetic analysis
Sammeth, Michael ; Rothgänger, Jörg ; Esser, Wolfram ; Albert, Jürgen ; Stoye, Jens ; Harmsen, DagIn: BIOINFORMATICS, Jg. 19 H. 12, S. 1592-15932003REPuter: the manifold applications of repeat analysis on a genomic scale
Kurtz, Stefan ; Choudhuri, Jomuna V. ; Ohlebusch, Enno ; Schleiermacher, Chris ; Stoye, Jens ; Giegerich, RobertIn: Nucleic Acids Research, Jg. 29 H. 22, S. 4633-46422001Rose: generating sequence families
Stoye, Jens ; Evers, Dirk ; Meyer, FolkerIn: BIOINFORMATICS, Jg. 14 H. 2, S. 157-1631998Simple and flexible detection of contiguous repeats using a suffix tree
Stoye, Jens ; Gusfield, DanIn: Theoretical Computer Science, Jg. 270 H. 1-2, S. 843-8562002A space efficient representation for sparse de Bruijn subgraphs
Quitzau, José Augusto Amgarten ; Stoye, Jens2008Statistics for approximate gene clusters
Jahn, Katharina ; Winter, Sascha ; Stoye, Jens ; Böcker, SebastianIn: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013