Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, AlexanderIn: GigaScience, Jg. 4 H. 12015Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer, Felix Gregor ; Heinl, Stefan ; Marx, Hans ; Pühler, Alfred ; Grabherr, Reingard ; Schlüter, AndreasIn: PLoS ONE, Jg. 10 H. 72015Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
Eikmeyer, Felix Gregor ; Rademacher, Antje ; Hanreich, Angelika ; Hennig, Magdalena ; Jaenicke, Sebastian ; Maus, Irena ; Wibberg, Daniel ; Zakrzewski, Martha ; Pühler, Alfred ; Klocke, Michael ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 6 H. 12013Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Hassa, Julia ; Klang, Johanna ; Benndorf, Dirk ; Pohl, Marcel ; Hülsemann, Benedikt ; Mächtig, Torsten ; Effenberger, Mathias ; Pühler, Alfred ; Schlüter, Andreas ; Theuerl, SusanneIn: Microorganisms, Jg. 9 H. 72021Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter
Hassa, Julia ; Wibberg, Daniel ; Maus, Irena ; Pühler, Alfred ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 12020Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 4, S. e00687-162016Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 3, S. e00609-162016Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn, Thomas ; Wibberg, Daniel ; Maus, Irena ; Winkler, Anika ; Nordmann, Patrice ; Pühler, Alfred ; Poirel, Laurent ; Schlüter, AndreasIn: Genome Announcements, Jg. 3 H. 52015acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux, Markus ; Krüger, Jan ; Rinke, Christian ; Maus, Irena ; Schlüter, Andreas ; Woyke, Tanja ; Sczyrba, Alexander ; Hammer, BarbaraIn: BMC Bioinformatics, Jg. 17 H. 12016Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Jg. 10 H. 12017Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis
Maus, Irena ; Kim, Yong Sung ; Wibberg, Daniel ; Stolze, Yvonne ; Off, Sandra ; Antonczyk, Sebastian ; Pühler, Alfred ; Scherer, Paul ; Schlüter, AndreasIn: Journal of Microbiology and Biotechnology, Jg. 27 H. 2, S. 321-3342017Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Jg. 15 H. 12020The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Maus, Irena ; Tubbesing, Tom Jonas ; Wibberg, Daniel ; Heyer, Robert ; Hassa, Julia ; Tomazetto, Geizecler ; Huang, Liren ; Bunk, Boyke ; Spröer, Cathrin ; Benndorf, Dirk ; Zverlov, Vladimir ; Pühler, Alfred ; Klocke, Michael ; Sczyrba, Alexander ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 122020Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Pühler, Alfred ; Schnürer, Anna ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 32016Microalgae as substrates for fermentative biogas production in a combined biorefinery concept
Mussgnug, Jan H. ; Klassen, Viktor ; Schlüter, Andreas ; Kruse, OlafIn: Journal of Biotechnology, Jg. 150 H. 1, S. 51-562010Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
Stolze, Yvonne ; Bremges, Andreas ; Rumming, Madis ; Henke, Christian ; Maus, Irena ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 9 H. 12016Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
Stolze, Yvonne ; Zakrzewski, Martha ; Maus, Irena ; Eikmeyer, Felix Gregor ; Jaenicke, Sebastian ; Rottmann, Nils ; Siebner, Clemens ; Pühler, Alfred ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 8 H. 12015Identification of Beneficial Microbial Consortia and Bioactive Compounds with Potential as Plant Biostimulants for a Sustainable Agriculture
Tabacchioni, Silvia ; Passato, Stefania ; Ambrosino, Patrizia ; Huang, Liren ; Caldara, Marina ; Cantale, Cristina ; Hett, Jonas ; Del Fiore, Antonella ; Fiore, Alessia ; Schlüter, Andreas ; Sczyrba, Alexander ; Maestri, Elena ; Marmiroli, Nelson ; Neuhoff, Daniel ; Nesme, Joseph ; Sørensen, Søren Johannes ; Aprea, Giuseppe ; Nobili, Chiara ; Presenti, Ombretta ; Giovannetti, Giusto [...]In: Microorganisms, Jg. 9 H. 22021The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance gene pair, the oxacillinase gene bla(NPS-1), and a tripartite antibiotic efflux system of the resistance-nodulation-division family
Tauch, Andreas ; Schlüter, Andreas ; Bischoff, N. ; Goesmann, Alexander ; Meyer, F. ; Pühler, AlfredIn: Molecular Genetics and Genomics, Jg. 268 H. 5, S. 570-5842003Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo, Gonzalo Arturo ; Wibberg, Daniel ; Winkler, Anika ; Ormeño-Orrillo, Ernesto ; Martínez-Romero, Esperanza ; Niehaus, Karsten ; Pühler, Alfred ; Kalinowski, Jörn ; Lagares, Antonio ; Schlüter, Andreas ; Pistorio, MarianoIn: Genome Announcements, Jg. 5 H. 4, S. e01513-162017