BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005de.NBI Cloud federation through ELIXIR AAI
Belmann, Peter ; Fischer, Björn ; Krüger, Jan ; Procházka, Michal ; Rasche, Helena ; Prinz, Manuel ; Hanussek, Maximilian ; Lang, Martin ; Bartusch, Felix ; Gläßle, Benjamin ; Krüger, Jens ; Pühler, Alfred ; Sczyrba, AlexanderIn: F1000Research, Jg. 82019The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamic [...]
Brune, Iris ; Werner, Hendrikje ; Hüser, Andrea T. ; Kalinowski, Jörn ; Pühler, Alfred ; Tauch, AndreasIn: BMC Genomics, Jg. 7 H. 12006EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer, Felix Gregor ; Heinl, Stefan ; Marx, Hans ; Pühler, Alfred ; Grabherr, Reingard ; Schlüter, AndreasIn: PLoS ONE, Jg. 10 H. 72015Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence [...]
Eikmeyer, Felix Gregor ; Rademacher, Antje ; Hanreich, Angelika ; Hennig, Magdalena ; Jaenicke, Sebastian ; Maus, Irena ; Wibberg, Daniel ; Zakrzewski, Martha ; Pühler, Alfred ; Klocke, Michael ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 6 H. 12013The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in [...]
Gaigalat, Lars ; Schlüter, Jan-Philip ; Hartmann, Michelle ; Mormann, Sascha ; Tauch, Andreas ; Pühler, Alfred ; Kalinowski, JörnIn: BMC Molecular Biology, Jg. 8 H. 12007The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy
Hansmeier, Nicole ; Bartels, Frank Wilco ; Ros, Robert ; Anselmetti, Dario ; Tauch, Andreas ; Pühler, Alfred ; Kalinowski, JörnIn: J Biotechnol, Jg. 112 H. 1-2, S. 177-1932004Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Hassa, Julia ; Klang, Johanna ; Benndorf, Dirk ; Pohl, Marcel ; Hülsemann, Benedikt ; Mächtig, Torsten ; Effenberger, Mathias ; Pühler, Alfred ; Schlüter, Andreas ; Theuerl, SusanneIn: Microorganisms, Jg. 9 H. 72021Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas [...]
Hassa, Julia ; Wibberg, Daniel ; Maus, Irena ; Pühler, Alfred ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 12020The time course of the transcriptomic response of Sinorhizobium meliloti 1021 following a shift to acidic pH
Hellweg, Christoph ; Pühler, Alfred ; Weidner, StefanIn: BMC MICROBIOLOGY, Jg. 9 H. 1, S. 37 ff.2009Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke, Sebastian ; Bunk, Boyke ; Wibberg, Daniel ; Spröer, Cathrin ; Hersemann, Lena ; Blom, Jochen ; Winkler, Anika ; Schatschneider, Sarah ; Albaum, Stefan ; Kölliker, Roland ; Goesmann, Alexander ; Pühler, Alfred ; Overmann, Jörg ; Vorhölter, Frank-JörgIn: Genome Announcements, Jg. 4 H. 62016Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole [...]
Kröber, Magdalena ; Wibberg, Daniel ; Grosch, Rita ; Eikmeyer, Felix Gregor ; Verwaaijen, Bart ; Chowdhury, Soumitra P. ; Hartmann, Anton ; Pühler, Alfred ; Schlüter, AndreasIn: Frontiers in Microbiology, Jg. 52014Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Jg. 10 H. 12017Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed [...]
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Jg. 15 H. 12020The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Maus, Irena ; Tubbesing, Tom Jonas ; Wibberg, Daniel ; Heyer, Robert ; Hassa, Julia ; Tomazetto, Geizecler ; Huang, Liren ; Bunk, Boyke ; Spröer, Cathrin ; Benndorf, Dirk ; Zverlov, Vladimir ; Pühler, Alfred ; Klocke, Michael ; Sczyrba, Alexander ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 122020Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted [...]
Nelkner, Johanna ; Henke, Christian ; Lin, Timo Wentong ; Pätzold, Wiebke ; Hassa, Julia ; Jaenicke, Sebastian ; Grosch, Rita ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Genes, Jg. 10 H. 62019