BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
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Blom, Jochen ; Albaum, Stefan ; Doppmeier, Daniel ; Pühler, Alfred ; Vorhölter, Frank-Jörg ; Zakrzewski, Martha ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, AlexanderIn: GigaScience, Jg. 4 H. 12015The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium [...]
Brune, Iris ; Brinkrolf, Karina ; Kalinowski, Jörn ; Pühler, Alfred ; Tauch, AndreasIn: BMC Genomics, Jg. 6 H. 12005The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamic [...]
Brune, Iris ; Werner, Hendrikje ; Hüser, Andrea T. ; Kalinowski, Jörn ; Pühler, Alfred ; Tauch, AndreasIn: BMC Genomics, Jg. 7 H. 12006Exopolysaccharide Characterization of Rhizobium favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa
Castellani, Lucas G. ; Luchetti, Abril ; Nilsson, Juliet F. ; Pérez-Giménez, Julieta ; Wegener, Caren ; Schlüter, Andreas ; Pühler, Alfred ; Lagares, Antonio ; Brom, Susana ; Pistorio, Mariano ; Niehaus, Karsten ; Torres Tejerizo, Gonzalo A.In: Frontiers in Plant Science, Jg. 122021The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy
Hansmeier, Nicole ; Bartels, Frank Wilco ; Ros, Robert ; Anselmetti, Dario ; Tauch, Andreas ; Pühler, Alfred ; Kalinowski, JörnIn: J Biotechnol, Jg. 112 H. 1-2, S. 177-1932004Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Hassa, Julia ; Klang, Johanna ; Benndorf, Dirk ; Pohl, Marcel ; Hülsemann, Benedikt ; Mächtig, Torsten ; Effenberger, Mathias ; Pühler, Alfred ; Schlüter, Andreas ; Theuerl, SusanneIn: Microorganisms, Jg. 9 H. 72021Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke, Sebastian ; Bunk, Boyke ; Wibberg, Daniel ; Spröer, Cathrin ; Hersemann, Lena ; Blom, Jochen ; Winkler, Anika ; Schatschneider, Sarah ; Albaum, Stefan ; Kölliker, Roland ; Goesmann, Alexander ; Pühler, Alfred ; Overmann, Jörg ; Vorhölter, Frank-JörgIn: Genome Announcements, Jg. 4 H. 62016Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ance [...]
López, J. L. ; Lozano, M. J. ; Lagares, A. ; Fabre, M. L. ; Draghi, W. O. ; Del Papa, M. F. ; Pistorio, M. ; Becker, A. ; Wibberg, Daniel ; Schlüter, Andreas ; Pühler, Alfred ; Blom, J. ; Goesmann, A. ; Lagares, A.In: mBio, Jg. 10 H. 32019Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Jg. 10 H. 12017Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed [...]
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Jg. 15 H. 12020The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Maus, Irena ; Tubbesing, Tom Jonas ; Wibberg, Daniel ; Heyer, Robert ; Hassa, Julia ; Tomazetto, Geizecler ; Huang, Liren ; Bunk, Boyke ; Spröer, Cathrin ; Benndorf, Dirk ; Zverlov, Vladimir ; Pühler, Alfred ; Klocke, Michael ; Sczyrba, Alexander ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 122020GenDB - an open source genome annotation system for prokaryote genomes
Meyer, Folker ; Goesmann, Alexander ; McHardy, Alice C. ; Bartels, Daniela ; Bekel, Thomas ; Clausen, Jörn ; Kalinowski, Jörn ; Linke, Burkhard ; Rupp, Oliver ; Giegerich, Robert ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 31 H. 8, S. 2187-21952003Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative [...]
Nelkner, Johanna ; Tejerizo, Gonzalo Torres ; Hassa, Julia ; Lin, Timo Wentong ; Witte, Julian ; Verwaaijen, Bart ; Winkler, Anika ; Bunk, Boyke ; Spröer, Cathrin ; Overmann, Jörg ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Genes, Jg. 10 H. 82019CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko ; Baumbach, Jan ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Kalinowski, Jörn ; Oehm, Sebastian ; Pühler, Alfred ; Rahmann, Sven ; Weile, Jochen ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 1 H. 12007Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications
Ros, Robert ; Eckel, Rainer ; Bartels, Frank Wilco ; Sischka, Andy ; Baumgarth, Birgit ; Wilking, Sven David ; Pühler, Alfred ; Sewald, Norbert ; Becker, Anke ; Anselmetti, DarioIn: Journal of Biotechnology, Jg. 112 H. 1-2, S. 5-122004Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110
Schaffert, Lena ; März, Camilla ; Burkhardt, Lisa ; Droste, Julian ; Brandt, David ; Busche, Tobias ; Rosen, Winfried ; Schneiker-Bekel, Susanne ; Persicke, Marcus ; Pühler, Alfred ; Kalinowski, JörnIn: Microbial Cell Factories, Jg. 18 H. 12019