acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux, Markus ; Krüger, Jan ; Rinke, Christian ; Maus, Irena ; Schlüter, Andreas ; Woyke, Tanja ; Sczyrba, Alexander ; Hammer, BarbaraIn: BMC Bioinformatics, Jg. 17 H. 12016Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis
Maus, Irena ; Kim, Yong Sung ; Wibberg, Daniel ; Stolze, Yvonne ; Off, Sandra ; Antonczyk, Sebastian ; Pühler, Alfred ; Scherer, Paul ; Schlüter, AndreasIn: Journal of Microbiology and Biotechnology, Jg. 27 H. 2, S. 321-3342017Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ance [...]
López, J. L. ; Lozano, M. J. ; Lagares, A. ; Fabre, M. L. ; Draghi, W. O. ; Del Papa, M. F. ; Pistorio, M. ; Becker, A. ; Wibberg, Daniel ; Schlüter, Andreas ; Pühler, Alfred ; Blom, J. ; Goesmann, A. ; Lagares, A.In: mBio, Jg. 10 H. 32019Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditi [...]
Stolze, Yvonne ; Zakrzewski, Martha ; Maus, Irena ; Eikmeyer, Felix Gregor ; Jaenicke, Sebastian ; Rottmann, Nils ; Siebner, Clemens ; Pühler, Alfred ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 8 H. 12015Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 4, S. e00687-162016Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn, Thomas ; Wibberg, Daniel ; Maus, Irena ; Winkler, Anika ; Nordmann, Patrice ; Pühler, Alfred ; Poirel, Laurent ; Schlüter, AndreasIn: Genome Announcements, Jg. 3 H. 52015Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Pühler, Alfred ; Schnürer, Anna ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 32016A comprehensive analysis of the Lactuca sativa, L. transcriptome during different stages of the compatible interaction with Rhizoctonia solani
Verwaaijen, Bart ; Wibberg, Daniel ; Winkler, Anika ; Zrenner, Rita ; Bednarz, Hanna ; Niehaus, Karsten ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Scientific Reports, Jg. 9 H. 12019Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, AlexanderIn: GigaScience, Jg. 4 H. 12015Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence [...]
Eikmeyer, Felix Gregor ; Rademacher, Antje ; Hanreich, Angelika ; Hennig, Magdalena ; Jaenicke, Sebastian ; Maus, Irena ; Wibberg, Daniel ; Zakrzewski, Martha ; Pühler, Alfred ; Klocke, Michael ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 6 H. 12013Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 [...]
Wibberg, Daniel ; Rupp, Oliver ; Blom, Jochen ; Jelonek, Lukas ; Kröber, Magdalena ; Verwaaijen, Bart ; Goesmann, Alexander ; Albaum, Stefan ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Plos One, Jg. 10 H. 122015Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 3, S. e00609-162016Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted [...]
Nelkner, Johanna ; Henke, Christian ; Lin, Timo Wentong ; Pätzold, Wiebke ; Hassa, Julia ; Jaenicke, Sebastian ; Grosch, Rita ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Genes, Jg. 10 H. 62019Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole [...]
Kröber, Magdalena ; Wibberg, Daniel ; Grosch, Rita ; Eikmeyer, Felix Gregor ; Verwaaijen, Bart ; Chowdhury, Soumitra P. ; Hartmann, Anton ; Pühler, Alfred ; Schlüter, AndreasIn: Frontiers in Microbiology, Jg. 52014Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative [...]
Nelkner, Johanna ; Tejerizo, Gonzalo Torres ; Hassa, Julia ; Lin, Timo Wentong ; Witte, Julian ; Verwaaijen, Bart ; Winkler, Anika ; Bunk, Boyke ; Spröer, Cathrin ; Overmann, Jörg ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Genes, Jg. 10 H. 82019Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas [...]
Hassa, Julia ; Wibberg, Daniel ; Maus, Irena ; Pühler, Alfred ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 12020Genome Sequence of the Symbiotic Type Strain Rhizobium tibeticum CCBAU85039T
Torres Tejerizo, Gonzalo Arturo ; Wibberg, Daniel ; Winkler, Anika ; Ormeño-Orrillo, Ernesto ; Martínez-Romero, Esperanza ; Niehaus, Karsten ; Pühler, Alfred ; Kalinowski, Jörn ; Lagares, Antonio ; Schlüter, Andreas ; Pistorio, MarianoIn: Genome Announcements, Jg. 5 H. 4, S. e01513-162017Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Jg. 10 H. 12017Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas p [...]
Stolze, Yvonne ; Bremges, Andreas ; Rumming, Madis ; Henke, Christian ; Maus, Irena ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 9 H. 12016Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer, Felix Gregor ; Heinl, Stefan ; Marx, Hans ; Pühler, Alfred ; Grabherr, Reingard ; Schlüter, AndreasIn: PLoS ONE, Jg. 10 H. 72015