A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum, Stefan ; Hahne, H. ; Otto, A. ; Haußmann, U. ; Becher, D. ; Poetsch, A. ; Goesmann, Alexander ; Nattkemper, Tim WilhelmIn: Proteome Science, Jg. 9 H. 12011BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
Blifernez-Klassen, Olga ; Klassen, Viktor ; Wibberg, Daniel ; Cebeci, Enis ; Henke, Christian ; Rückert, Christian ; Chaudhari, Swapnil ; Rupp, Oliver ; Blom, Jochen ; Winkler, Anika ; Al-Dilaimi, Arwa ; Goesmann, Alexander ; Sczyrba, Alexander ; Kalinowski, Jörn ; Bräutigam, Andrea ; Kruse, OlafIn: Scientific Reports, Jg. 11 H. 12021EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8
Farnbacher, Max ; Jahns, Thomas ; Willrodt, Dirk ; Daniel, Rolf ; Haas, Rainer ; Goesmann, Alexander ; Kurtz, Stefan ; Rieder, GabrieleIn: BMC Genomics, Jg. 11 H. 12010The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.
Henckel, Kolja ; Küster, Helge ; Stutz, Leonhard ; Goesmann, AlexanderIn: BMC Research Notes, Jg. 3 H. 12010TRUNCATULIX - a data warehouse for the legume community
Henckel, Kolja ; Runte, Kai J. ; Bekel, Thomas ; Dondrup, Michael ; Jakobi, Tobias ; Küster, Helge ; Goesmann, AlexanderIn: BMC Plant Biology, Jg. 9 H. 1, S. 19 ff.2009ReadXplorer 2 - detailed read mapping analysis and visualization from one single source
Hilker, Rolf ; Stadermann, Kai Bernd ; Schwengers, Oliver ; Anisiforov, Evgeny ; Jaenicke, Sebastian ; Weisshaar, Bernd ; Zimmermann, Tobias ; Goesmann, AlexanderIn: Bioinformatics, Jg. 32 H. 24, S. 3702-37082016Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula
Hohnjec, Natalija ; Henckel, Kolja ; Bekel, Thomas ; Gouzy, Jerome ; Dondrup, Michael ; Goesmann, Alexander ; Küster, HelgeIn: FUNCTIONAL PLANT BIOLOGY, Jg. 33 H. 8, S. 737-7482006Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke, Sebastian ; Bunk, Boyke ; Wibberg, Daniel ; Spröer, Cathrin ; Hersemann, Lena ; Blom, Jochen ; Winkler, Anika ; Schatschneider, Sarah ; Albaum, Stefan ; Kölliker, Roland ; Goesmann, Alexander ; Pühler, Alfred ; Overmann, Jörg ; Vorhölter, Frank-JörgIn: Genome Announcements, Jg. 4 H. 62016CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko ; Baumbach, Jan ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Kalinowski, Jörn ; Oehm, Sebastian ; Pühler, Alfred ; Rahmann, Sven ; Weile, Jochen ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 1 H. 12007Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum [...]
Neuweger, Heiko ; Persicke, Marcus ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Winnebald, Jörn ; Schneider, Jessica ; Kalinowski, Jörn ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 3 H. 12009The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes
Overbeek, Ross ; Begley, Tadhg ; Butler, Ralph M. ; Choudhuri, Jomuna V. ; Chuang, Han-Yu ; Cohoon, Matthew ; Crécy-Lagard, Valérie de ; Diaz, Naryttza N. ; Disz, Terry ; Edwards, Robert ; Fonstein, Michael ; Frank, Ed D. ; Gerdes, Svetlana ; Glass, Elizabeth M. ; Goesmann, Alexander ; Hanson, Andrew ; Iwata-Reuyl, Dirk ; Jensen, Roy ; Jamshidi, Neema ; Krause, Lutz [...]In: Nucleic Acids Research, Jg. 33 H. 17, S. 5691-57022005De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite
Pauli, Martina ; Chakarov, Nayden ; Rupp, Oliver ; Kalinowski, Jörn ; Goesmann, Alexander ; Sorenson, Michael ; Krüger, Oliver ; Hoffman, JosephIn: BMC Genomics, Jg. 16 H. 12015