BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel [...]
Bogen, Christian ; Al-Dilaimi, Arwa ; Albersmeier, Andreas ; Wichmann, Julian ; Grundmann, Michael ; Rupp, Oliver ; Lauersen, Kyle J. ; Blifernez-Klassen, Olga ; Kalinowski, Jörn ; Goesmann, Alexander ; Mussgnug, Jan H. ; Kruse, OlafIn: BMC Genomics, Jg. 14 H. 12013EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser
Goesmann, Alexander ; Linke, Burkhard ; Bartels, Daniela ; Dondrup, Michael ; Krause, Lutz ; Neuweger, Heiko ; Oehm, Sebastian ; Paczian, Tobias ; Wilke, Andreas ; Meyer, FolkerIn: Nucleic Acids Research, Jg. 33 H. Web Server, S. W710-W7162005The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol [...]
Jaeger, Daniel ; Winkler, Anika ; Mussgnug, Jan H. ; Kalinowski, Jörn ; Goesmann, Alexander ; Kruse, OlafIn: Biotechnology for Biofuels, Jg. 10 H. 12017Learning to classify organic and conventional wheat - a machine-learning driven approach using the MeltDB 2.0 metabolomics analysis platform
Kessler, Nikolas ; Bonte, Anja ; Albaum, Stefan ; Mäder, Paul ; Messmer, Monika ; Goesmann, Alexander ; Niehaus, Karsten ; Langenkämper, Georg ; Nattkemper, Tim WilhelmIn: Frontiers in Bioinformatics and Computational Biology, Jg. 32015GenDB - an open source genome annotation system for prokaryote genomes
Meyer, Folker ; Goesmann, Alexander ; McHardy, Alice C. ; Bartels, Daniela ; Bekel, Thomas ; Clausen, Jörn ; Kalinowski, Jörn ; Linke, Burkhard ; Rupp, Oliver ; Giegerich, Robert ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 31 H. 8, S. 2187-21952003The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes
Overbeek, Ross ; Begley, Tadhg ; Butler, Ralph M. ; Choudhuri, Jomuna V. ; Chuang, Han-Yu ; Cohoon, Matthew ; Crécy-Lagard, Valérie de ; Diaz, Naryttza N. ; Disz, Terry ; Edwards, Robert ; Fonstein, Michael ; Frank, Ed D. ; Gerdes, Svetlana ; Glass, Elizabeth M. ; Goesmann, Alexander ; Hanson, Andrew ; Iwata-Reuyl, Dirk ; Jensen, Roy ; Jamshidi, Neema ; Krause, Lutz [...]In: Nucleic Acids Research, Jg. 33 H. 17, S. 5691-57022005The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance [...]
Tauch, Andreas ; Schlüter, Andreas ; Bischoff, N. ; Goesmann, Alexander ; Meyer, F. ; Pühler, AlfredIn: Molecular Genetics and Genomics, Jg. 268 H. 5, S. 570-5842003