Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
In: BMC Genomics, Jg. 21 H. Suppl. 22020
Approximating the DCJ distance of balanced genomes in linear time
In: Algorithms for Molecular Biology, Jg. 12 H. 12017
BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005

Gene family assignment-free comparative genomics
In: BMC Bioinformatics, Jg. 13 H. Suppl 19: Proc. of RECOMB-CG 20122012

Genomic distance under gene substitutions
In: BMC Bioinformatics, Jg. 12 H. Suppl 9: Proc. of RECOMB-CG 20112011
GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data
In: BMC Genomics, Jg. 19 H. Suppl. 52018
Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings
In: BMC Genomics, Jg. 15 H. Suppl. 6: Proc. of RECOMB-CG 20142014
Improving the divide-and-conquer approach to sum-of-pairs multiple sequence alignment
In: Applied mathematics letters, Jg. 10 H. 2, S. 67-731997


On the Inversion-Indel Distance
In: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013
On the weight of indels in genomic distances
In: BMC Bioinformatics, Jg. 12 H. Suppl 9: RECOMB-CG 20112011
Orthology Detection Combining Clustering and Synteny for Very Large Datasets
In: PLoS ONE, Jg. 9 H. 82014
Phylogenetic classification of short environmental DNA fragments
In: Nucleic Acids Research, Jg. 36 H. 7, S. 2230-22392008