- vom 3.3.2022
Detecting High Scoring Local Alignments in Pangenome Graphs
Schulz, Tizian ; Wittler, Roland ; Rahmann, Sven ; Hach, Faraz ; Stoye, JensIn: Bioinformatics, Jg. 37 H. 16, S. 2266-22742021
- vom 14.7.2021
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach, Wolfgang ; Jünemann, Sebastian ; Tille, Felix ; Goesmann, Alexander ; Stoye, JensIn: BMC Bioinformatics, Jg. 10 H. 1, S. 430 ff.2009The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick ; Szczepanowski, Rafael ; Rückert, Christian ; Kalinowski, Jörn ; Klein, Andreas ; Selber, Klaus ; Wehmeier, Udo F. ; Stoye, Jens ; Pühler, AlfredIn: BMC Genomics, Jg. 13 H. 12012Taxonomic classification of metagenomic shotgun sequences with CARMA3.
Gerlach, Wolfgang ; Stoye, JensIn: Nucleic Acids Res, Jg. 39 H. 14, S. e91 ff.2011Statistics for approximate gene clusters
Jahn, Katharina ; Winter, Sascha ; Stoye, Jens ; Böcker, SebastianIn: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013Simple and flexible detection of contiguous repeats using a suffix tree
Stoye, Jens ; Gusfield, DanIn: Theoretical Computer Science, Jg. 270 H. 1-2, S. 843-8562002REPuter: the manifold applications of repeat analysis on a genomic scale
Kurtz, Stefan ; Choudhuri, Jomuna V. ; Ohlebusch, Enno ; Schleiermacher, Chris ; Stoye, Jens ; Giegerich, RobertIn: Nucleic Acids Research, Jg. 29 H. 22, S. 4633-46422001QAlign: quality-based multiple alignments with dynamic phylogenetic analysis
Sammeth, Michael ; Rothgänger, Jörg ; Esser, Wolfram ; Albert, Jürgen ; Stoye, Jens ; Harmsen, DagIn: BIOINFORMATICS, Jg. 19 H. 12, S. 1592-15932003Phylogenetic Comparative Assembly
Husemann, Peter ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 5 H. 12010Phylogenetic classification of short environmental DNA fragments
Krause, Lutz ; Diaz, Naryttza N. ; Goesmann, Alexander ; Kelley, Scott ; Nattkemper, Tim Wilhelm ; Rohwer, Forest ; Edwards, Robert A. ; Stoye, JensIn: Nucleic Acids Research, Jg. 36 H. 7, S. 2230-22392008Orthology Detection Combining Clustering and Synteny for Very Large Datasets
Lechner, Marcus ; Hernandez-Rosales, Maribel ; Dörr, Daniel ; Wieseke, Nicolas ; Thévenin, Annelyse ; Stoye, Jens ; Hartmann, Roland K. ; Prohaska, Sonja J. ; Stadler, Peter F.In: PLoS ONE, Jg. 9 H. 82014On the weight of indels in genomic distances
Dias Vieira Braga, Marília ; Machado, Raphael ; Ribeiro, Leonardo C. ; Stoye, JensIn: BMC Bioinformatics, Jg. 12 H. Suppl 9: RECOMB-CG 20112011On the Inversion-Indel Distance
Willing, Eyla ; Zaccaria, Simone ; Dias Vieira Braga, Marília ; Stoye, JensIn: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013On the family-free DCJ distance and similarity
Viduani Martinez, Fábio Henrique ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 10 H. 12015Multiple genome comparison based on overlap regions of pairwise local alignments
Jahn, Katharina ; Sudek, Henner ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. Suppl. 19: Proc. of RECOMB-CG 20122012Linear time algorithms for finding and representing all the tandem repeats in a string
Gusfield, Dan ; Stoye, JensIn: Journal of computer and system sciences, Jg. 69 H. 4, S. 525-5462004Large scale hierarchical clustering of protein sequences
Krause, Antje ; Stoye, Jens ; Vingron, MartinIn: BMC Bioinformatics, Jg. 6 H. 12005Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings
Dörr, Daniel ; Stoye, Jens ; Böcker, Sebastian ; Jahn, KatharinaIn: BMC Genomics, Jg. 15 H. Suppl. 6: Proc. of RECOMB-CG 20142014
- vom 13.7.2021
GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data
Schulz, Tizian ; Stoye, Jens ; Dörr, DanielIn: BMC Genomics, Jg. 19 H. Suppl. 52018GISMO - gene identification using a support vector machine for ORF classification
Krause, Lutz ; McHardy, Alice C. ; Nattkemper, Tim Wilhelm ; Pühler, Alfred ; Stoye, Jens ; Meyer, FolkerIn: Nucleic Acids Research, Jg. 35 H. 2, S. 540-5492007