- on 03/03/2022
Detecting High Scoring Local Alignments in Pangenome Graphs
Schulz, Tizian ; Wittler, Roland ; Rahmann, Sven ; Hach, Faraz ; Stoye, JensIn: Bioinformatics, Vol. 37 Issue 16, page 2266-22742021
- on 14/07/2021
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach, Wolfgang ; Jünemann, Sebastian ; Tille, Felix ; Goesmann, Alexander ; Stoye, JensIn: BMC Bioinformatics, Vol. 10 Issue 1, page 430 et seq.2009The SYSTERS protein sequence cluster set
Krause, Antje ; Stoye, Jens ; Vingron, MartinIn: Nucleic Acids Research, Vol. 28 Issue 1, page 270-2722000The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick ; Szczepanowski, Rafael ; Rückert, Christian ; Kalinowski, Jörn ; Klein, Andreas ; Selber, Klaus ; Wehmeier, Udo F. ; Stoye, Jens ; Pühler, AlfredIn: BMC Genomics, Vol. 13 Issue 12012Taxonomic classification of metagenomic shotgun sequences with CARMA3.
Gerlach, Wolfgang ; Stoye, JensIn: Nucleic Acids Res, Vol. 39 Issue 14, page e91 et seq.2011Statistics for approximate gene clusters
Jahn, Katharina ; Winter, Sascha ; Stoye, Jens ; Böcker, SebastianIn: BMC Bioinformatics, Vol. 14 Issue Suppl 15: Proc. of RECOMB-CG 20132013Simple and flexible detection of contiguous repeats using a suffix tree
Stoye, Jens ; Gusfield, DanIn: Theoretical Computer Science, Vol. 270 Issue 1-2, page 843-8562002Rose: generating sequence families
Stoye, Jens ; Evers, Dirk ; Meyer, FolkerIn: BIOINFORMATICS, Vol. 14 Issue 2, page 157-1631998REPuter: the manifold applications of repeat analysis on a genomic scale
Kurtz, Stefan ; Choudhuri, Jomuna V. ; Ohlebusch, Enno ; Schleiermacher, Chris ; Stoye, Jens ; Giegerich, RobertIn: Nucleic Acids Research, Vol. 29 Issue 22, page 4633-46422001QAlign: quality-based multiple alignments with dynamic phylogenetic analysis
Sammeth, Michael ; Rothgänger, Jörg ; Esser, Wolfram ; Albert, Jürgen ; Stoye, Jens ; Harmsen, DagIn: BIOINFORMATICS, Vol. 19 Issue 12, page 1592-15932003Phylogenetic Comparative Assembly
Husemann, Peter ; Stoye, JensIn: Algorithms for Molecular Biology, Vol. 5 Issue 12010Phylogenetic classification of short environmental DNA fragments
Krause, Lutz ; Diaz, Naryttza N. ; Goesmann, Alexander ; Kelley, Scott ; Nattkemper, Tim Wilhelm ; Rohwer, Forest ; Edwards, Robert A. ; Stoye, JensIn: Nucleic Acids Research, Vol. 36 Issue 7, page 2230-22392008Orthology Detection Combining Clustering and Synteny for Very Large Datasets
Lechner, Marcus ; Hernandez-Rosales, Maribel ; Dörr, Daniel ; Wieseke, Nicolas ; Thévenin, Annelyse ; Stoye, Jens ; Hartmann, Roland K. ; Prohaska, Sonja J. ; Stadler, Peter F.In: PLoS ONE, Vol. 9 Issue 82014On the weight of indels in genomic distances
Dias Vieira Braga, Marília ; Machado, Raphael ; Ribeiro, Leonardo C. ; Stoye, JensIn: BMC Bioinformatics, Vol. 12 Issue Suppl 9: RECOMB-CG 20112011On the Inversion-Indel Distance
Willing, Eyla ; Zaccaria, Simone ; Dias Vieira Braga, Marília ; Stoye, JensIn: BMC Bioinformatics, Vol. 14 Issue Suppl 15: Proc. of RECOMB-CG 20132013On the family-free DCJ distance and similarity
Viduani Martinez, Fábio Henrique ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, JensIn: Algorithms for Molecular Biology, Vol. 10 Issue 12015Multiple sequence alignment with the Divide-and-Conquer method.
Stoye, JensIn: Gene, Vol. 211 Issue 2, page GC45-GC561998Multiple genome comparison based on overlap regions of pairwise local alignments
Jahn, Katharina ; Sudek, Henner ; Stoye, JensIn: BMC Bioinformatics, Vol. 13 Issue Suppl. 19: Proc. of RECOMB-CG 20122012Linear time algorithms for finding and representing all the tandem repeats in a string
Gusfield, Dan ; Stoye, JensIn: Journal of computer and system sciences, Vol. 69 Issue 4, page 525-5462004Large scale hierarchical clustering of protein sequences
Krause, Antje ; Stoye, Jens ; Vingron, MartinIn: BMC Bioinformatics, Vol. 6 Issue 12005