- on 03/03/2022
The Bielefeld Institute for Bioinformatics Infrastructure
Stoye, Jens (Ed.) ; Wittler, Roland (Ed.)2021Detecting High Scoring Local Alignments in Pangenome Graphs
Schulz, Tizian ; Wittler, Roland ; Rahmann, Sven ; Hach, Faraz ; Stoye, JensIn: Bioinformatics, Vol. 37 Issue 16, page 2266-22742021
- on 14/07/2021
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach, Wolfgang ; Jünemann, Sebastian ; Tille, Felix ; Goesmann, Alexander ; Stoye, JensIn: BMC Bioinformatics, Vol. 10 Issue 1, page 430 et seq.2009The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick ; Szczepanowski, Rafael ; Rückert, Christian ; Kalinowski, Jörn ; Klein, Andreas ; Selber, Klaus ; Wehmeier, Udo F. ; Stoye, Jens ; Pühler, AlfredIn: BMC Genomics, Vol. 13 Issue 12012Taxonomic classification of metagenomic shotgun sequences with CARMA3.
Gerlach, Wolfgang ; Stoye, JensIn: Nucleic Acids Res, Vol. 39 Issue 14, page e91 et seq.2011Suffix Tree Construction and Storage with Limited Main Memory
Schürmann, Klaus-Bernd ; Stoye, Jens2003Statistics for approximate gene clusters
Jahn, Katharina ; Winter, Sascha ; Stoye, Jens ; Böcker, SebastianIn: BMC Bioinformatics, Vol. 14 Issue Suppl 15: Proc. of RECOMB-CG 20132013Simple and flexible detection of contiguous repeats using a suffix tree
Stoye, Jens ; Gusfield, DanIn: Theoretical Computer Science, Vol. 270 Issue 1-2, page 843-8562002REPuter: the manifold applications of repeat analysis on a genomic scale
Kurtz, Stefan ; Choudhuri, Jomuna V. ; Ohlebusch, Enno ; Schleiermacher, Chris ; Stoye, Jens ; Giegerich, RobertIn: Nucleic Acids Research, Vol. 29 Issue 22, page 4633-46422001QAlign: quality-based multiple alignments with dynamic phylogenetic analysis
Sammeth, Michael ; Rothgänger, Jörg ; Esser, Wolfram ; Albert, Jürgen ; Stoye, Jens ; Harmsen, DagIn: BIOINFORMATICS, Vol. 19 Issue 12, page 1592-15932003Phylogenetic Comparative Assembly
Husemann, Peter ; Stoye, JensIn: Algorithms for Molecular Biology, Vol. 5 Issue 12010Phylogenetic classification of short environmental DNA fragments
Krause, Lutz ; Diaz, Naryttza N. ; Goesmann, Alexander ; Kelley, Scott ; Nattkemper, Tim Wilhelm ; Rohwer, Forest ; Edwards, Robert A. ; Stoye, JensIn: Nucleic Acids Research, Vol. 36 Issue 7, page 2230-22392008