Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
Rubert, Diego ; Martinez, Fábio Henrique Viduani ; Stoye, Jens ; Dörr, DanielIn: BMC Genomics, Jg. 21 H. Suppl. 22020Approximating the DCJ distance of balanced genomes in linear time
Rubert, Diego ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, Jens ; Martinez, Fábio Henrique ViduaniIn: Algorithms for Molecular Biology, Jg. 12 H. 12017Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
Holley, Guillaume ; Wittler, Roland ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 11 H. 12016Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
Hoffmann, Nils ; Keck, Matthias ; Neuweger, Heiko ; Wilhelm, Mathias ; Högy, Petra ; Niehaus, Karsten ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. 12012The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick ; Szczepanowski, Rafael ; Rückert, Christian ; Kalinowski, Jörn ; Klein, Andreas ; Selber, Klaus ; Wehmeier, Udo F. ; Stoye, Jens ; Pühler, AlfredIn: BMC Genomics, Jg. 13 H. 12012Computing the family-free DCJ similarity
Rubert, Diego ; Hoshino, Edna A. ; Dias Vieira Braga, Marília ; Stoye, Jens ; Martinez, Fábio Henrique ViduaniIn: BMC Bioinformatics, Jg. 19 H. Suppl. 62018Finding all maximal perfect haplotype blocks in linear time
Alanko, Jarno ; Bannai, Hideo ; Cazaux, Bastien ; Peterlongo, Pierre ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 152020Gene family assignment-free comparative genomics
Dörr, Daniel ; Thévenin, Annelyse ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. Suppl 19: Proc. of RECOMB-CG 20122012Genomic distance under gene substitutions
Dias Vieira Braga, Marília ; Machado, Raphael ; Ribeiro, Leonardo C. ; Stoye, JensIn: BMC Bioinformatics, Jg. 12 H. Suppl 9: Proc. of RECOMB-CG 20112011GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data
Schulz, Tizian ; Stoye, Jens ; Dörr, DanielIn: BMC Genomics, Jg. 19 H. Suppl. 52018Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings
Dörr, Daniel ; Stoye, Jens ; Böcker, Sebastian ; Jahn, KatharinaIn: BMC Genomics, Jg. 15 H. Suppl. 6: Proc. of RECOMB-CG 20142014Multiple genome comparison based on overlap regions of pairwise local alignments
Jahn, Katharina ; Sudek, Henner ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. Suppl. 19: Proc. of RECOMB-CG 20122012On the family-free DCJ distance and similarity
Viduani Martinez, Fábio Henrique ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 10 H. 12015On the Inversion-Indel Distance
Willing, Eyla ; Zaccaria, Simone ; Dias Vieira Braga, Marília ; Stoye, JensIn: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013On the weight of indels in genomic distances
Dias Vieira Braga, Marília ; Machado, Raphael ; Ribeiro, Leonardo C. ; Stoye, JensIn: BMC Bioinformatics, Jg. 12 H. Suppl 9: RECOMB-CG 20112011Orthology Detection Combining Clustering and Synteny for Very Large Datasets
Lechner, Marcus ; Hernandez-Rosales, Maribel ; Dörr, Daniel ; Wieseke, Nicolas ; Thévenin, Annelyse ; Stoye, Jens ; Hartmann, Roland K. ; Prohaska, Sonja J. ; Stadler, Peter F.In: PLoS ONE, Jg. 9 H. 82014Statistics for approximate gene clusters
Jahn, Katharina ; Winter, Sascha ; Stoye, Jens ; Böcker, SebastianIn: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013Taxonomic classification of metagenomic shotgun sequences with CARMA3.
Gerlach, Wolfgang ; Stoye, JensIn: Nucleic Acids Res, Jg. 39 H. 14, S. e91 ff.2011