BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005Phytoplankton consortia as a blueprint for mutually beneficial eukaryote-bacteria ecosystems based on the biocoenosis of Botryococcus consortia
Blifernez-Klassen, Olga ; Klassen, Viktor ; Wibberg, Daniel ; Cebeci, Enis ; Henke, Christian ; Rückert, Christian ; Chaudhari, Swapnil ; Rupp, Oliver ; Blom, Jochen ; Winkler, Anika ; Al-Dilaimi, Arwa ; Goesmann, Alexander ; Sczyrba, Alexander ; Kalinowski, Jörn ; Bräutigam, Andrea ; Kruse, OlafIn: Scientific Reports, Jg. 11 H. 12021Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel [...]
Bogen, Christian ; Al-Dilaimi, Arwa ; Albersmeier, Andreas ; Wichmann, Julian ; Grundmann, Michael ; Rupp, Oliver ; Lauersen, Kyle J. ; Blifernez-Klassen, Olga ; Kalinowski, Jörn ; Goesmann, Alexander ; Mussgnug, Jan H. ; Kruse, OlafIn: BMC Genomics, Jg. 14 H. 12013EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8
Farnbacher, Max ; Jahns, Thomas ; Willrodt, Dirk ; Daniel, Rolf ; Haas, Rainer ; Goesmann, Alexander ; Kurtz, Stefan ; Rieder, GabrieleIn: BMC Genomics, Jg. 11 H. 12010The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008TRUNCATULIX - a data warehouse for the legume community
Henckel, Kolja ; Runte, Kai J. ; Bekel, Thomas ; Dondrup, Michael ; Jakobi, Tobias ; Küster, Helge ; Goesmann, AlexanderIn: BMC Plant Biology, Jg. 9 H. 1, S. 19 ff.2009Phylogenetic classification of short environmental DNA fragments
Krause, Lutz ; Diaz, Naryttza N. ; Goesmann, Alexander ; Kelley, Scott ; Nattkemper, Tim Wilhelm ; Rohwer, Forest ; Edwards, Robert A. ; Stoye, JensIn: Nucleic Acids Research, Jg. 36 H. 7, S. 2230-22392008GenDB - an open source genome annotation system for prokaryote genomes
Meyer, Folker ; Goesmann, Alexander ; McHardy, Alice C. ; Bartels, Daniela ; Bekel, Thomas ; Clausen, Jörn ; Kalinowski, Jörn ; Linke, Burkhard ; Rupp, Oliver ; Giegerich, Robert ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 31 H. 8, S. 2187-21952003CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko ; Baumbach, Jan ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Kalinowski, Jörn ; Oehm, Sebastian ; Pühler, Alfred ; Rahmann, Sven ; Weile, Jochen ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 1 H. 12007The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes
Overbeek, Ross ; Begley, Tadhg ; Butler, Ralph M. ; Choudhuri, Jomuna V. ; Chuang, Han-Yu ; Cohoon, Matthew ; Crécy-Lagard, Valérie de ; Diaz, Naryttza N. ; Disz, Terry ; Edwards, Robert ; Fonstein, Michael ; Frank, Ed D. ; Gerdes, Svetlana ; Glass, Elizabeth M. ; Goesmann, Alexander ; Hanson, Andrew ; Iwata-Reuyl, Dirk ; Jensen, Roy ; Jamshidi, Neema ; Krause, Lutz [...]In: Nucleic Acids Research, Jg. 33 H. 17, S. 5691-57022005De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite
Pauli, Martina ; Chakarov, Nayden ; Rupp, Oliver ; Kalinowski, Jörn ; Goesmann, Alexander ; Sorenson, Michael ; Krüger, Oliver ; Hoffman, JosephIn: BMC Genomics, Jg. 16 H. 12015Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity
Smits, Theo H. M. ; Jaenicke, Sebastian ; Rezzonico, Fabio ; Kamber, Tim ; Goesmann, Alexander ; Frey, Jürg E ; Duffy, BrionIn: BMC Genomics, Jg. 11 H. 12010Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii
Toepel, Jörg ; Albaum, Stefan ; Arvidsson, S. ; Goesmann, Alexander ; La Russa, Marco ; Rogge, Kristin ; Kruse, OlafIn: BMC Genomics, Jg. 12 H. 12011Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
Wibberg, Daniel ; Genzel, Franziska ; Verwaaijen, Bart ; Blom, Jochen ; Rupp, Oliver ; Goesmann, Alexander ; Zrenner, Rita ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Journal of Fungi, Jg. 7 H. 102021Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 [...]
Wibberg, Daniel ; Rupp, Oliver ; Blom, Jochen ; Jelonek, Lukas ; Kröber, Magdalena ; Verwaaijen, Bart ; Goesmann, Alexander ; Albaum, Stefan ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Plos One, Jg. 10 H. 122015Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38
Wibberg, Daniel ; Tielen, Petra ; Blom, Jochen ; Rosin, Nathalie ; Schobert, Max ; Tüpker, Reinhilde ; Schatschneider, Sarah ; Spilker, Dominik ; Albersmeier, Andreas ; Goesmann, Alexander ; Vorhölter, Frank-Jörg ; Pühler, Alfred ; Jahn, DieterIn: Genome announcements, Jg. 2 H. 22014