Finding all maximal perfect haplotype blocks in linear time
Alanko, Jarno ; Bannai, Hideo ; Cazaux, Bastien ; Peterlongo, Pierre ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 152020BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005Common intervals and sorting by reversals: a marriage of necessity
Bergeron, Anne ; Heber, Steffen ; Stoye, JensIn: Bioinformatics, Jg. 18 H. Suppl 2, S. S54-S632002Algorithmic complexity of protein identification: combinatorics of weighted strings
Cieliebak, Mark ; Erlebach, Thomas ; Lipták, Zsuzsanna ; Stoye, Jens ; Welzl, EmoIn: Discrete Applied Mathematics, Jg. 137 H. 1, S. 27-462004Genomic distance under gene substitutions
Dias Vieira Braga, Marília ; Machado, Raphael ; Ribeiro, Leonardo C. ; Stoye, JensIn: BMC Bioinformatics, Jg. 12 H. Suppl 9: Proc. of RECOMB-CG 20112011On the weight of indels in genomic distances
Dias Vieira Braga, Marília ; Machado, Raphael ; Ribeiro, Leonardo C. ; Stoye, JensIn: BMC Bioinformatics, Jg. 12 H. Suppl 9: RECOMB-CG 20112011Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings
Dörr, Daniel ; Stoye, Jens ; Böcker, Sebastian ; Jahn, KatharinaIn: BMC Genomics, Jg. 15 H. Suppl. 6: Proc. of RECOMB-CG 20142014Gene family assignment-free comparative genomics
Dörr, Daniel ; Thévenin, Annelyse ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. Suppl 19: Proc. of RECOMB-CG 20122012WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
Gerlach, Wolfgang ; Jünemann, Sebastian ; Tille, Felix ; Goesmann, Alexander ; Stoye, JensIn: BMC Bioinformatics, Jg. 10 H. 1, S. 430 ff.2009Taxonomic classification of metagenomic shotgun sequences with CARMA3.
Gerlach, Wolfgang ; Stoye, JensIn: Nucleic Acids Res, Jg. 39 H. 14, S. e91 ff.2011Efficient implementation of lazy suffix trees
Giegerich, Robert ; Kurtz, Stefan ; Stoye, JensIn: SOFTWARE-PRACTICE & EXPERIENCE, Jg. 33 H. 11, S. 1035-10492003Linear time algorithms for finding and representing all the tandem repeats in a string
Gusfield, Dan ; Stoye, JensIn: Journal of computer and system sciences, Jg. 69 H. 4, S. 525-5462004Contig selection in physical mapping
Heber, Steffen ; Stoye, Jens ; Frohme, Marcus ; Hoheisel, Jörg ; Vingron, MartinIn: Journal of Computational Biology, Jg. 7 H. 3-4, S. 395-4082000Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
Hoffmann, Nils ; Keck, Matthias ; Neuweger, Heiko ; Wilhelm, Mathias ; Högy, Petra ; Niehaus, Karsten ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. 12012Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
Holley, Guillaume ; Wittler, Roland ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 11 H. 12016Phylogenetic Comparative Assembly
Husemann, Peter ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 5 H. 12010Multiple genome comparison based on overlap regions of pairwise local alignments
Jahn, Katharina ; Sudek, Henner ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. Suppl. 19: Proc. of RECOMB-CG 20122012Statistics for approximate gene clusters
Jahn, Katharina ; Winter, Sascha ; Stoye, Jens ; Böcker, SebastianIn: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013Large scale hierarchical clustering of protein sequences
Krause, Antje ; Stoye, Jens ; Vingron, MartinIn: BMC Bioinformatics, Jg. 6 H. 12005The SYSTERS protein sequence cluster set
Krause, Antje ; Stoye, Jens ; Vingron, MartinIn: Nucleic Acids Research, Jg. 28 H. 1, S. 270-2722000