BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005de.NBI Cloud federation through ELIXIR AAI
Belmann, Peter ; Fischer, Björn ; Krüger, Jan ; Procházka, Michal ; Rasche, Helena ; Prinz, Manuel ; Hanussek, Maximilian ; Lang, Martin ; Bartusch, Felix ; Gläßle, Benjamin ; Krüger, Jens ; Pühler, Alfred ; Sczyrba, AlexanderIn: F1000Research, Jg. 82019EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom, Jochen ; Albaum, Stefan ; Doppmeier, Daniel ; Pühler, Alfred ; Vorhölter, Frank-Jörg ; Zakrzewski, Martha ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, AlexanderIn: GigaScience, Jg. 4 H. 12015The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences
Brune, Iris ; Brinkrolf, Karina ; Kalinowski, Jörn ; Pühler, Alfred ; Tauch, AndreasIn: BMC Genomics, Jg. 6 H. 12005The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum
Brune, Iris ; Werner, Hendrikje ; Hüser, Andrea T. ; Kalinowski, Jörn ; Pühler, Alfred ; Tauch, AndreasIn: BMC Genomics, Jg. 7 H. 12006Exopolysaccharide Characterization of Rhizobium favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa
Castellani, Lucas G. ; Luchetti, Abril ; Nilsson, Juliet F. ; Pérez-Giménez, Julieta ; Wegener, Caren ; Schlüter, Andreas ; Pühler, Alfred ; Lagares, Antonio ; Brom, Susana ; Pistorio, Mariano ; Niehaus, Karsten ; Torres Tejerizo, Gonzalo A.In: Frontiers in Plant Science, Jg. 122021Tight linkage of ginA and a putative regulatory gene in Rhizobium leguminosarum
Colonna-Romano, S. ; Riccio, A. ; Guida, M. ; Defez, R. ; Lamberti, A. ; Iaccarino, M. ; Arnold, Walter ; Priefer, Ursula B. ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 15 H. 5, S. 1951-19641987EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009A maltose-regulated large genomic region is activated by the transcriptional regulator MalT in Actinoplanes sp. SE50/110
Droste, Julian ; Kulisch, Martin ; Wolf, Timo ; Schaffert, Lena ; Schneiker-Bekel, Susanne ; Pühler, Alfred ; Kalinowski, JörnIn: Applied microbiology and biotechnology, Jg. 104, S. 9283–9294 ff.2020The expression of the acarbose biosynthesis gene cluster in Actinoplanes sp. SE50/110 is dependent on the growth phase.
Droste, Julian ; Ortseifen, Vera ; Schaffert, Lena ; Persicke, Marcus ; Schneiker-Bekel, Susanne ; Pühler, Alfred ; Kalinowski, JörnIn: BMC genomics, Jg. 212020Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer, Felix Gregor ; Heinl, Stefan ; Marx, Hans ; Pühler, Alfred ; Grabherr, Reingard ; Schlüter, AndreasIn: PLoS ONE, Jg. 10 H. 72015Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
Eikmeyer, Felix Gregor ; Rademacher, Antje ; Hanreich, Angelika ; Hennig, Magdalena ; Jaenicke, Sebastian ; Maus, Irena ; Wibberg, Daniel ; Zakrzewski, Martha ; Pühler, Alfred ; Klocke, Michael ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 6 H. 12013The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate: sugar phosphotransferase system (PTS) in Corynebacterium glutamicum
Gaigalat, Lars ; Schlüter, Jan-Philip ; Hartmann, Michelle ; Mormann, Sascha ; Tauch, Andreas ; Pühler, Alfred ; Kalinowski, JörnIn: BMC Molecular Biology, Jg. 8 H. 12007ExoS/ChvI Two-Component Signal-Transduction System Activated in the Absence of Bacterial Phosphatidylcholine
Geiger, Otto ; Sohlenkamp, Christian ; Vera-Cruz, Diana ; Medeot, Daniela B ; Martinez-Aguilar, Lourdes ; Sahonero-Canavesi, Diana X ; Weidner, Stefan ; Pühler, Alfred ; Lopez-Lara, Isabel MIn: Frontiers in Plant Science, Jg. 122021The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a novel open reading frame
Grönger, Petra ; Manian, Sundaram S. ; Reiländer, Helmut ; O´Connell, Michael ; Priefer, Ursula B. ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 15 H. 1, S. 31-491987Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy
Hansmeier, Nicole ; Bartels, Frank Wilco ; Ros, Robert ; Anselmetti, Dario ; Tauch, Andreas ; Pühler, Alfred ; Kalinowski, JörnIn: J Biotechnol, Jg. 112 H. 1-2, S. 177-1932004Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Hassa, Julia ; Klang, Johanna ; Benndorf, Dirk ; Pohl, Marcel ; Hülsemann, Benedikt ; Mächtig, Torsten ; Effenberger, Mathias ; Pühler, Alfred ; Schlüter, Andreas ; Theuerl, SusanneIn: Microorganisms, Jg. 9 H. 72021Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter
Hassa, Julia ; Wibberg, Daniel ; Maus, Irena ; Pühler, Alfred ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 12020