A guide through the computational analysis of isotope-labeled mass spectrometry-based quantitative proteomics data: an application study
Albaum, Stefan ; Hahne, H. ; Otto, A. ; Haußmann, U. ; Becher, D. ; Poetsch, A. ; Goesmann, Alexander ; Nattkemper, Tim WilhelmIn: Proteome Science, Jg. 9 H. 12011BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005EDGAR: a software framework for the comparative analysis of prokaryotic genomes
Blom, Jochen ; Albaum, Stefan ; Doppmeier, Daniel ; Pühler, Alfred ; Vorhölter, Frank-Jörg ; Zakrzewski, Martha ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser
Goesmann, Alexander ; Linke, Burkhard ; Bartels, Daniela ; Dondrup, Michael ; Krause, Lutz ; Neuweger, Heiko ; Oehm, Sebastian ; Paczian, Tobias ; Wilke, Andreas ; Meyer, FolkerIn: Nucleic Acids Research, Jg. 33 H. Web Server, S. W710-W7162005The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008Complete Genome Sequence of the Barley Pathogen Xanthomonas translucens pv. translucens DSM 18974 T (ATCC 19319 T)
Jaenicke, Sebastian ; Bunk, Boyke ; Wibberg, Daniel ; Spröer, Cathrin ; Hersemann, Lena ; Blom, Jochen ; Winkler, Anika ; Schatschneider, Sarah ; Albaum, Stefan ; Kölliker, Roland ; Goesmann, Alexander ; Pühler, Alfred ; Overmann, Jörg ; Vorhölter, Frank-JörgIn: Genome Announcements, Jg. 4 H. 62016ALLocator: An Interactive Web Platform for the Analysis of Metabolomic LC-ESI-MS Datasets, Enabling Semi-Automated, User-Revised Compound Annotation and [...]
Kessler, Nikolas ; Walter, Frederik ; Persicke, Marcus ; Albaum, Stefan ; Kalinowski, Jörn ; Goesmann, Alexander ; Niehaus, Karsten ; Nattkemper, Tim WilhelmIn: PLoS ONE, Jg. 9 H. 112014GenDB - an open source genome annotation system for prokaryote genomes
Meyer, Folker ; Goesmann, Alexander ; McHardy, Alice C. ; Bartels, Daniela ; Bekel, Thomas ; Clausen, Jörn ; Kalinowski, Jörn ; Linke, Burkhard ; Rupp, Oliver ; Giegerich, Robert ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 31 H. 8, S. 2187-21952003CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko ; Baumbach, Jan ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Kalinowski, Jörn ; Oehm, Sebastian ; Pühler, Alfred ; Rahmann, Sven ; Weile, Jochen ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 1 H. 12007Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum [...]
Neuweger, Heiko ; Persicke, Marcus ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Winnebald, Jörn ; Schneider, Jessica ; Kalinowski, Jörn ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 3 H. 12009The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes
Overbeek, Ross ; Begley, Tadhg ; Butler, Ralph M. ; Choudhuri, Jomuna V. ; Chuang, Han-Yu ; Cohoon, Matthew ; Crécy-Lagard, Valérie de ; Diaz, Naryttza N. ; Disz, Terry ; Edwards, Robert ; Fonstein, Michael ; Frank, Ed D. ; Gerdes, Svetlana ; Glass, Elizabeth M. ; Goesmann, Alexander ; Hanson, Andrew ; Iwata-Reuyl, Dirk ; Jensen, Roy ; Jamshidi, Neema ; Krause, Lutz [...]In: Nucleic Acids Research, Jg. 33 H. 17, S. 5691-57022005De novo assembly of the dual transcriptomes of a polymorphic raptor species and its malarial parasite
Pauli, Martina ; Chakarov, Nayden ; Rupp, Oliver ; Kalinowski, Jörn ; Goesmann, Alexander ; Sorenson, Michael ; Krüger, Oliver ; Hoffman, JosephIn: BMC Genomics, Jg. 16 H. 12015The 79,370-bp conjugative plasmid pB4 consists of an IncP-1 beta backbone loaded with a chromate resistance transposon, the strA-strB streptomycin resistance [...]
Tauch, Andreas ; Schlüter, Andreas ; Bischoff, N. ; Goesmann, Alexander ; Meyer, F. ; Pühler, AlfredIn: Molecular Genetics and Genomics, Jg. 268 H. 5, S. 570-5842003Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal [...]
Trost, Eva ; Götker, Susanne ; Schneider, Jessica ; Schneiker-Bekel, Susanne ; Szczepanowski, Rafael ; Tilker, Alexandra ; Viehöver, Prisca ; Arnold, Walter ; Bekel, Thomas ; Blom, Jochen ; Gartemann, Karl-Heinz ; Linke, Burkhard ; Goesmann, Alexander ; Pühler, Alfred ; Shukla, Sanjay K. ; Tauch, AndreasIn: BMC Genomics, Jg. 11 H. 12010Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
Wibberg, Daniel ; Genzel, Franziska ; Verwaaijen, Bart ; Blom, Jochen ; Rupp, Oliver ; Goesmann, Alexander ; Zrenner, Rita ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Journal of Fungi, Jg. 7 H. 102021Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R-solani AG1-IA, AG1-IB, AG3 [...]
Wibberg, Daniel ; Rupp, Oliver ; Blom, Jochen ; Jelonek, Lukas ; Kröber, Magdalena ; Verwaaijen, Bart ; Goesmann, Alexander ; Albaum, Stefan ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Plos One, Jg. 10 H. 122015Genome Sequence of the Acute Urethral Catheter Isolate Pseudomonas aeruginosa MH38
Wibberg, Daniel ; Tielen, Petra ; Blom, Jochen ; Rosin, Nathalie ; Schobert, Max ; Tüpker, Reinhilde ; Schatschneider, Sarah ; Spilker, Dominik ; Albersmeier, Andreas ; Goesmann, Alexander ; Vorhölter, Frank-Jörg ; Pühler, Alfred ; Jahn, DieterIn: Genome announcements, Jg. 2 H. 22014