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Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Diaz, Naryttza N. ; Krause, Lutz ; Goesmann, Alexander ; Niehaus, Karsten ; Nattkemper, Tim WilhelmIn: BMC Bioinformatics, Jg. 10 H. 1, S. 56 ff.2009EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009Sequencing, annotation, and comparative genome analysis of the gerbil-adapted Helicobacter pylori strain B8
Farnbacher, Max ; Jahns, Thomas ; Willrodt, Dirk ; Daniel, Rolf ; Haas, Rainer ; Goesmann, Alexander ; Kurtz, Stefan ; Rieder, GabrieleIn: BMC Genomics, Jg. 11 H. 12010BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser
Goesmann, Alexander ; Linke, Burkhard ; Bartels, Daniela ; Dondrup, Michael ; Krause, Lutz ; Neuweger, Heiko ; Oehm, Sebastian ; Paczian, Tobias ; Wilke, Andreas ; Meyer, FolkerIn: Nucleic Acids Research, Jg. 33 H. Web Server, S. W710-W7162005The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008MediPlEx - a tool to combine in silico and experimental gene expression profiles of the model legume Medicago truncatula.
Henckel, Kolja ; Küster, Helge ; Stutz, Leonhard ; Goesmann, AlexanderIn: BMC Research Notes, Jg. 3 H. 12010TRUNCATULIX - a data warehouse for the legume community
Henckel, Kolja ; Runte, Kai J. ; Bekel, Thomas ; Dondrup, Michael ; Jakobi, Tobias ; Küster, Helge ; Goesmann, AlexanderIn: BMC Plant Biology, Jg. 9 H. 1, S. 19 ff.2009Transcriptional snapshots provide insights into the molecular basis of arbuscular mycorrhiza in the model legume Medicago truncatula
Hohnjec, Natalija ; Henckel, Kolja ; Bekel, Thomas ; Gouzy, Jerome ; Dondrup, Michael ; Goesmann, Alexander ; Küster, HelgeIn: FUNCTIONAL PLANT BIOLOGY, Jg. 33 H. 8, S. 737-7482006Phylogenetic classification of short environmental DNA fragments
Krause, Lutz ; Diaz, Naryttza N. ; Goesmann, Alexander ; Kelley, Scott ; Nattkemper, Tim Wilhelm ; Rohwer, Forest ; Edwards, Robert A. ; Stoye, JensIn: Nucleic Acids Research, Jg. 36 H. 7, S. 2230-22392008Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format
Krawczyk, Justina ; Goesmann, Alexander ; Nolte, Ralf ; Werber, Martin ; Weisshaar, BerndIn: Source Code for Biology and Medicine, Jg. 4 H. 1, S. 4 ff.2009GenDB - an open source genome annotation system for prokaryote genomes
Meyer, Folker ; Goesmann, Alexander ; McHardy, Alice C. ; Bartels, Daniela ; Bekel, Thomas ; Clausen, Jörn ; Kalinowski, Jörn ; Linke, Burkhard ; Rupp, Oliver ; Giegerich, Robert ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 31 H. 8, S. 2187-21952003CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko ; Baumbach, Jan ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Kalinowski, Jörn ; Oehm, Sebastian ; Pühler, Alfred ; Rahmann, Sven ; Weile, Jochen ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 1 H. 12007Visualizing post genomics data-sets on customized pathway maps by ProMeTra – aeration-dependent gene expression and metabolism of Corynebacterium glutamicum [...]
Neuweger, Heiko ; Persicke, Marcus ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Winnebald, Jörn ; Schneider, Jessica ; Kalinowski, Jörn ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 3 H. 12009The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes
Overbeek, Ross ; Begley, Tadhg ; Butler, Ralph M. ; Choudhuri, Jomuna V. ; Chuang, Han-Yu ; Cohoon, Matthew ; Crécy-Lagard, Valérie de ; Diaz, Naryttza N. ; Disz, Terry ; Edwards, Robert ; Fonstein, Michael ; Frank, Ed D. ; Gerdes, Svetlana ; Glass, Elizabeth M. ; Goesmann, Alexander ; Hanson, Andrew ; Iwata-Reuyl, Dirk ; Jensen, Roy ; Jamshidi, Neema ; Krause, Lutz [...]In: Nucleic Acids Research, Jg. 33 H. 17, S. 5691-57022005Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163(T) and comparative genomic insights into plant pathogenicity
Smits, Theo H. M. ; Jaenicke, Sebastian ; Rezzonico, Fabio ; Kamber, Tim ; Goesmann, Alexander ; Frey, Jürg E ; Duffy, BrionIn: BMC Genomics, Jg. 11 H. 12010Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum
Yang, Ines ; John, Uwe ; Beszteri, Sára ; Glöckner, Gernot ; Krock, Bernd ; Goesmann, Alexander ; Cembella, Allan D.In: BMC Genomics, Jg. 11 H. 12010