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Abouelhoda, Mohamed ; El-Kalioby, Mohamed ; Giegerich, RobertIn: BMC Evolutionary Biology, Jg. 10 H. 12010Fast index based algorithms and software for matching position specific scoring matrices
Beckstette, Michael ; Homann, Robert ; Giegerich, Robert ; Kurtz, StefanIn: BMC Bioinformatics, Jg. 7 H. 12006Fine-tuning structural RNA alignments in the twilight zone
Bremges, Andreas ; Schirmer, Stefanie ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 11 H. 12010A comprehensive comparison of comparative RNA structure prediction approaches
Gardner, Paul P. ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 5 H. 12004Efficient implementation of lazy suffix trees
Giegerich, Robert ; Kurtz, Stefan ; Stoye, JensIn: SOFTWARE-PRACTICE & EXPERIENCE, Jg. 33 H. 11, S. 1035-10492003Abstract shapes of RNA
Giegerich, Robert ; Voss, Björn ; Rehmsmeier, MarcIn: Nucleic Acids Research, Jg. 32 H. 16, S. 4843-48512004Efficient computation of absent words in genomic sequences
Herold, Julia ; Kurtz, Stefan ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 9 H. 12008Ambivalent covariance models
Janssen, Stefan ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 16 H. 12015Shape based indexing for faster search of RNA family databases
Janssen, Stefan ; Reeder, Jens ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 9 H. 1, S. 131 ff.2008Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
Janssen, Stefan ; Schudoma, Christian ; Steger, Gerhard ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 12 H. 12011e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences
Krüger, Jan ; Sczyrba, Alexander ; Kurtz, Stefan ; Giegerich, RobertIn: NUCLEIC ACIDS RESEARCH, Jg. 32 H. Web Server, S. W301-W3042004REPuter: the manifold applications of repeat analysis on a genomic scale
Kurtz, Stefan ; Choudhuri, Jomuna V. ; Ohlebusch, Enno ; Schleiermacher, Chris ; Stoye, Jens ; Giegerich, RobertIn: Nucleic Acids Research, Jg. 29 H. 22, S. 4633-46422001GeneFisher-P: variations of GeneFisher as processes in Bio-jETI
Lamprecht, Anna-Lena ; Margaria, Tiziana ; Steffen, Bernhard ; Sczyrba, Alexander ; Hartmeier, Sven ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 9 H. Suppl 42008GenDB - an open source genome annotation system for prokaryote genomes
Meyer, Folker ; Goesmann, Alexander ; McHardy, Alice C. ; Bartels, Daniela ; Bekel, Thomas ; Clausen, Jörn ; Kalinowski, Jörn ; Linke, Burkhard ; Rupp, Oliver ; Giegerich, Robert ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 31 H. 8, S. 2187-21952003Effective ambiguity checking in biosequence analysis
Reeder, Janina ; Steffen, Peter ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 6 H. 12005Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Reeder, Jens ; Giegerich, RobertIn: BMC Bioinformatics, Jg. 5 H. 12004pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows
Reeder, Jens ; Steffen, Peter ; Giegerich, RobertIn: NUCLEIC ACIDS RESEARCH, Jg. 35 H. Web Server, S. W320-W3242007Pareto optimization in algebraic dynamic programming
Saule, Cedric ; Giegerich, RobertIn: Algorithms for Molecular Biology, Jg. 10 H. 12015A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
Schlüter, Jan-Philip ; Reinkensmeier, Jan ; Daschkey, Svenja ; Evguenieva-Hackenberg, Elena ; Janssen, Stefan ; Jaenicke, Sebastian ; Becker, Joerg D. ; Giegerich, Robert ; Becker, AnkeIn: BMC Genomics, Jg. 11 H. 12010XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Sczyrba, Alexander ; Beckstette, Michael ; Brivanlou, Ali H. ; Giegerich, Robert ; Altmann, Curtis R.In: BMC Genomics, Jg. 6 H. 12005