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QAlign: quality-based multiple alignments with dynamic phylogenetic analysis
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Phylogenetic classification of short environmental DNA fragments
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Orthology Detection Combining Clustering and Synteny for Very Large Datasets
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On the weight of indels in genomic distances
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On the Inversion-Indel Distance
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Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings
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GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data
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Genomic distance under gene substitutions
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Gene family assignment-free comparative genomics
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