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Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
Rubert, Diego ; Martinez, Fábio Henrique Viduani ; Stoye, Jens ; Dörr, DanielIn: BMC Genomics, Jg. 21 H. Suppl. 2Approximating the DCJ distance of balanced genomes in linear time
Rubert, Diego ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, Jens ; Martinez, Fábio Henrique ViduaniIn: Algorithms for Molecular Biology, Jg. 12 H. 1Benchmarking tools for the alignment of functional noncoding DNA
Pollard, Daniel A. ; Bergman, Casey M. ; Stoye, Jens ; Celniker, Susan E. ; Eisen, Michael B.In: BMC Bioinformatics, Jg. 5 H. 1Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
Holley, Guillaume ; Wittler, Roland ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 11 H. 1The complete genome sequence of the acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick ; Szczepanowski, Rafael ; Rückert, Christian ; Kalinowski, Jörn ; Klein, Andreas ; Selber, Klaus ; Wehmeier, Udo F. ; Stoye, Jens ; Pühler, AlfredIn: BMC Genomics, Jg. 13 H. 1Computing the family-free DCJ similarity
Rubert, Diego ; Hoshino, Edna A. ; Dias Vieira Braga, Marília ; Stoye, Jens ; Martinez, Fábio Henrique ViduaniIn: BMC Bioinformatics, Jg. 19 H. Suppl. 6Contig selection in physical mapping
Heber, Steffen ; Stoye, Jens ; Frohme, Marcus ; Hoheisel, Jörg ; Vingron, MartinIn: Journal of Computational Biology, Jg. 7 H. 3-4, S. 395-408Correction: Benchmarking tools for the alignment of functional noncoding DNA
Pollard, Daniel A. ; Bergman, Casey M. ; Stoye, Jens ; Celniker, Susan E. ; Eisen, Michael B.In: BMC Bioinformatics, Jg. 5 H. 1Detecting High Scoring Local Alignments in Pangenome Graphs
Schulz, Tizian ; Wittler, Roland ; Rahmann, Sven ; Hach, Faraz ; Stoye, JensIn: Bioinformatics, Jg. 37 H. 16, S. 2266-2274Finding all maximal perfect haplotype blocks in linear time
Alanko, Jarno ; Bannai, Hideo ; Cazaux, Bastien ; Peterlongo, Pierre ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 15Flexible protein annotation with sequence- and secondary structure information
Bannert, Constantin2008Gene family assignment-free comparative genomics
Dörr, Daniel ; Thévenin, Annelyse ; Stoye, JensIn: BMC Bioinformatics, Jg. 13 H. Suppl 19: Proc. of RECOMB-CG 2012GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data
Schulz, Tizian ; Stoye, Jens ; Dörr, DanielIn: BMC Genomics, Jg. 19 H. Suppl. 5Identifying Gene Clusters by Discovering Common Intervals in Indeterminate Strings
Dörr, Daniel ; Stoye, Jens ; Böcker, Sebastian ; Jahn, KatharinaIn: BMC Genomics, Jg. 15 H. Suppl. 6: Proc. of RECOMB-CG 2014