Rubert, Diego P; Martinez, Fabio V; Dias Vieira Braga, Marília: Natural family-free genomic distance.. In: Algorithms for molecular biology : AMB. Jg.16 H. 1. 2021
Inhalt
- Relational diagram and DCJ-indel distance of family-based singular genomes
- DCJ distance of canonical genomes
- Runs and indel-potential
- DCJ-indel distance of singular circular genomes
- DCJ-indel distance of singular linear genomes
- DCJ-indel distance of family-based natural genomes
- The family-free setting
- Family-free relational diagram
- Consistent decompositions
- Capping
- Family-based singular genomes
- Capped family-free relational diagram
- Alternative formula for computing the indel-potential of cycles
- New formula for computing the weighted distance
- Cutting threshold
- ILP formulation to compute the family-free DCJ-indel distance
- Experiments
- ILP solver and processing environment
- Performance evaluation of on simulated genomes
- Real data analysis
- Conclusions and discussion
- Acknowledgements
- References