Biere, Niklas; Ghaffar, Mehmood; Doebbe, Anja; Jaeger, Daniel; Rothe, Nils; Friedrich, Benjamin M.; Hofestädt, Ralf; Schreiber, Falk; Kruse, Olaf ; Sommer, Bjoern: Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. In: Journal of Integrative Bioinformatics. Jg.15 H. 2. 2018
Inhalt
- Background
- Limits of Microscopy
- Heuristic Cell Modeling and Integrative Cell Visualization
- “Chlamydomonas reinhardtii 3D – From Biological Cells to Biofuels”
- Cell Visualization with Blender
- Methods
- Workflow
- Stereoscopic 3D Visualization
- Mesoscopic Modeling of C. reinhardtii
- Cell Wall and Overall Structure
- Chloroplast/Thylakoid
- Nucleus, ER, Golgi Apparatus
- Pyrenoid and Starch
- Lipid Bodies
- Mitochondria
- Cytoskeleton
- Eyespot
- Flagella and the Movement Cycle of C. reinhardtii
- Functional Modeling of C. reinhardtii Energy-Producing Pathways
- Molecular Modeling of a C. reinhardtii membrane
- Multiscale Stereoscopic 3D Visualization
- Results and Discussion
- Conclusions and Outlook