Kröber, Magdalena; Wibberg, Daniel; Grosch, Rita; Eikmeyer, Felix Gregor; Verwaaijen, Bart; Chowdhury, Soumitra P.; Hartmann, Anton; Pühler, Alfred; Schlüter, Andreas: Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole [...]. In: Frontiers in Microbiology. Jg.5. 2014
Inhalt
- Field Trial and Preparation of DNA Samples
- High-Throughput Sequencing of Metagenomic DNA
- Bioinformatic Analysis of Metagenome Sequence Data
- Annotation of Functional Subsystems
- Mapping of Metagenome Sequence Reads to the B. amyloliquefaciens FZB42 Genome
- Results
- Metagenome Sequencing of Lettuce Rhizosphere Microbial Communities
- Estimation of Lettuce Rhizosphere Colonization by B. amyloliquefaciens FZB42 Based on Fragment Recruitment Analyses
- Comparative Taxonomic Characterization of the Microbial Communities in the Lettuce Rhizospheres with and without Application of B. amyloliquefaciens FZB42 by Whole Metagenome Sequence Analyses
- Analysis of the Potential Impact of B. amyloliquefaciens FZB42 on Annotated Functional Subsystems of Microbial Community Members in the Lettuce Rhizospheres
- Discussion
- B. amyloliquefaciens FZB42 is Able to Successfully Colonize the Lettuce Rhizosphere in the Course of the Field Experiment
- Inoculation with B. amyloliquefaciens FZB42 has No Major Impact on the Microbial Communities in the Lettuce Rhizosphere and on the Functional Subsystem Assignments of Community Members
- Concluding Remarks
- Author Contributions
- Acknowledgments
- Supplementary Material
- References