Eikmeyer, Felix Gregor; Rademacher, Antje; Hanreich, Angelika; Hennig, Magdalena; Jaenicke, Sebastian; Maus, Irena; Wibberg, Daniel; Zakrzewski, Martha; Pühler, Alfred; Klocke, Michael; Schlüter, Andreas: Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence [...]. In: Biotechnology for Biofuels. Jg.6 H. 1. 2013
Inhalt
- Background
- Results
- Searching for putative pathogens in taxonomic profiles deduced from metagenome sequence data of biogas-producing microbial communities
- Mapping of metagenome sequence data to selected reference genomes of relevant pathogens
- Searching for putative pathogenicity determinants in functional profiles deduced from metagenome sequence data of biogas-producing microbial communities by exploiting Protein Family Database (pfam) assignments
- Searching for putative virulence determinants in metagenome sequence data implementing BLAST searches vs. the Microbial virulence database MvirDB
- Discussion
- Methods
- Datasets
- Taxonomic profiles
- Genome mappings
- Identification of reads with similarity to toxin protein families
- BLASTn vs. the microbial virulence database MvirDB
- Abbreviations
- Abbreviations
- Competing interests
- Authors’ contributions
- Acknowledgements
- Author details
- References