Gurtowski, James; Cancio, Anthony; Shah, Hardik; Levovitz, Chaya; George, Ajish; Homann, Robert; Sachidanandam, Ravi: Geoseq: a tool for dissecting deep-sequencing datasets. In: BMC Bioinformatics. Jg.11 H. 1. 2010
Inhalt
- Implementation
- Geoseq algorithms and software overview
- Geoseq algorithm implementation
- Hardware and software architecture
- Results
- Tool description
- Browser for short read datasets
- Analysis of libraries with a user-supplied sequence
- Additional features for sRNA-seq data
- Application of Geoseq
- Discussion
- Benefits of the browsing function
- Comparison of Geoseq analysis to existing tools
- Limitations of Geoseq
- Conclusions
- Availability and requirements
- Acknowledgements
- Author details
- Authors' contributions
- References