Sczyrba, Alexander; Beckstette, Michael; Brivanlou, Ali H.; Giegerich, Robert; Altmann, Curtis R.: XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis. In: BMC Genomics. Jg.6 H. 1. 2005
Inhalt
- Background
- Construction and Content
- Sequence sources and cleanup
- Clustering and assembly of tentative contig sequences
- Sequence analysis
- Identification of chimeric sequences
- Definitions
- Identification of Full Length Orf containing COntigs (FLOCOs)
- Selection of putative Full Length Insert containing CLones (FLICLs)
- Gene Ontology prediction and Functional Classification
- Identification of conserved genes not found in major model organisms
- Utility
- User interface
- Homeobox gene identification
- Homologue identification from the Cancer Genome Anatomy Project (CGAP)
- Homologues of Drosophila eye development genes
- Discussion
- Comparison to human and mouse
- Sequences without hits
- Completeness of Xenopus EST set
- Future prospects
- Conclusion
- Availability and requirements
- List of abbreviations used
- Authors' contributions
- Additional material
- Acknowledgements
- References