Diaz, Naryttza N.; Krause, Lutz; Goesmann, Alexander ; Niehaus, Karsten; Nattkemper, Tim Wilhelm: TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. In: BMC Bioinformatics. Jg.10 H. 1. 2009, S. 56 ff.
Inhalt
- Background
- Results
- Algorithm
- Testing
- Evaluation strategy
- Parameter optimization
- Classification accuracy for genomic fragments of variable length
- Assessing the classification accuracy of TACOA and PhyloPythia for genomic fragments of variable length
- Influence of horizontal gene transfer on the classification accuracy of an intrinsic-based classifier
- Discussion and conclusion
- Methods
- Computation of genomic feature vectors (GFV) using the oligonucleotide frequency deviation
- Measuring the classification accuracy
- Measuring the classification accuracy in the comparison of PhyloPythia and TACOA
- Availability
- Authors' contributions
- Additional material
- Acknowledgements
- References