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Algorithmic complexity of protein identification: combinatorics of weighted strings
Cieliebak, Mark ; Erlebach, Thomas ; Lipták, Zsuzsanna ; Stoye, Jens ; Welzl, EmoIn: Discrete Applied Mathematics, Jg. 137 H. 1, S. 27-462004Biological applications for de Bruijn subgraphs and interval group testing
Quitzau, José Augusto Amgarten2010Common intervals and sorting by reversals: a marriage of necessity
Bergeron, Anne ; Heber, Steffen ; Stoye, JensIn: Bioinformatics, Jg. 18 H. Suppl 2, S. S54-S632002Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms
Oehm, Sebastian ; Gilbert, David ; Tauch, Andreas ; Stoye, Jens ; Goesmann, AlexanderIn: NUCLEIC ACIDS RESEARCH, Jg. 36 H. Web Server, S. W433-W4372008Divide-and-conquer multiple alignment with segment-based constraints
Sammeth, Michael ; Morgenstern, Burkhard ; Stoye, JensIn: BIOINFORMATICS, Jg. 19 H. Suppl 2, S. ii189-ii1952003Efficient implementation of lazy suffix trees
Giegerich, Robert ; Kurtz, Stefan ; Stoye, JensIn: SOFTWARE-PRACTICE & EXPERIENCE, Jg. 33 H. 11, S. 1035-10492003Linear time algorithms for finding and representing all the tandem repeats in a string
Gusfield, Dan ; Stoye, JensIn: Journal of computer and system sciences, Jg. 69 H. 4, S. 525-5462004MCC-IMS data analysis using automated spectra processing and explorative visualisation methods
Bunkowski, Alexander2012Phylogenetic Comparative Assembly
Husemann, Peter ; Stoye, JensIn: Algorithms for Molecular Biology, Jg. 5 H. 12010Simple and flexible detection of contiguous repeats using a suffix tree
Stoye, Jens ; Gusfield, DanIn: Theoretical Computer Science, Jg. 270 H. 1-2, S. 843-8562002A space efficient representation for sparse de Bruijn subgraphs
Quitzau, José Augusto Amgarten ; Stoye, Jens2008