Algorithmic complexity of protein identification: combinatorics of weighted strings
Cieliebak, Mark ; Erlebach, Thomas ; Lipták, Zsuzsanna ; Stoye, Jens ; Welzl, EmoIn: Discrete Applied Mathematics, Vol. 137 Issue 1, page 27-462004Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)
Sammeth, Michael ; Stoye, Jens2005An iterative method for faster sum-of-pairs multiple sequence alignment
Reinert, Knut ; Stoye, Jens ; Will, TorstenIn: Bioinformatics, Vol. 16 Issue 9, page 808-8142000Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants
Rubert, Diego ; Martinez, Fábio Henrique Viduani ; Stoye, Jens ; Dörr, DanielIn: BMC Genomics, Vol. 21 Issue Suppl. 22020Approximating the DCJ distance of balanced genomes in linear time
Rubert, Diego ; Feijão, Pedro ; Dias Vieira Braga, Marília ; Stoye, Jens ; Martinez, Fábio Henrique ViduaniIn: Algorithms for Molecular Biology, Vol. 12 Issue 12017BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Vol. 21 Issue 7, page 853-8592005Benchmarking tools for the alignment of functional noncoding DNA
Pollard, Daniel A. ; Bergman, Casey M. ; Stoye, Jens ; Celniker, Susan E. ; Eisen, Michael B.In: BMC Bioinformatics, Vol. 5 Issue 12004The Bielefeld Institute for Bioinformatics Infrastructure
Stoye, Jens (Ed.) ; Wittler, Roland (Ed.)2021Biological applications for de Bruijn subgraphs and interval group testing
Quitzau, José Augusto Amgarten2010Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
Holley, Guillaume ; Wittler, Roland ; Stoye, JensIn: Algorithms for Molecular Biology, Vol. 11 Issue 12016Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
Hoffmann, Nils ; Keck, Matthias ; Neuweger, Heiko ; Wilhelm, Mathias ; Högy, Petra ; Niehaus, Karsten ; Stoye, JensIn: BMC Bioinformatics, Vol. 13 Issue 12012Common intervals and sorting by reversals: a marriage of necessity
Bergeron, Anne ; Heber, Steffen ; Stoye, JensIn: Bioinformatics, Vol. 18 Issue Suppl 2, page S54-S632002Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms
Oehm, Sebastian ; Gilbert, David ; Tauch, Andreas ; Stoye, Jens ; Goesmann, AlexanderIn: NUCLEIC ACIDS RESEARCH, Vol. 36 Issue Web Server, page W433-W4372008