Orthology Detection Combining Clustering and Synteny for Very Large Datasets
In: PLoS ONE, Jg. 9 H. 82014


Phylogenetic classification of short environmental DNA fragments
In: Nucleic Acids Research, Jg. 36 H. 7, S. 2230-22392008




QAlign: quality-based multiple alignments with dynamic phylogenetic analysis
In: BIOINFORMATICS, Jg. 19 H. 12, S. 1592-15932003
REPuter: the manifold applications of repeat analysis on a genomic scale
In: Nucleic Acids Research, Jg. 29 H. 22, S. 4633-46422001
Simple and flexible detection of contiguous repeats using a suffix tree
In: Theoretical Computer Science, Jg. 270 H. 1-2, S. 843-8562002

Statistics for approximate gene clusters
In: BMC Bioinformatics, Jg. 14 H. Suppl 15: Proc. of RECOMB-CG 20132013



Taxonomic classification of metagenomic shotgun sequences with CARMA3.
In: Nucleic Acids Res, Jg. 39 H. 14, S. e91 ff.2011

WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads
In: BMC Bioinformatics, Jg. 10 H. 1, S. 430 ff.2009
