BACCardI - a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison
Bartels, Daniela ; Kespohl, Sebastian ; Albaum, Stefan ; Drüke, Tanja ; Goesmann, Alexander ; Herold, Julia ; Kaiser, Olaf ; Pühler, Alfred ; Pfeiffer, Friedhelm ; Raddatz, Günter ; Stoye, Jens ; Meyer, Folker ; Schuster, Stephan C.In: Bioinformatics, Jg. 21 H. 7, S. 853-8592005de.NBI Cloud federation through ELIXIR AAI
Belmann, Peter ; Fischer, Björn ; Krüger, Jan ; Procházka, Michal ; Rasche, Helena ; Prinz, Manuel ; Hanussek, Maximilian ; Lang, Martin ; Bartusch, Felix ; Gläßle, Benjamin ; Krüger, Jens ; Pühler, Alfred ; Sczyrba, AlexanderIn: F1000Research, Jg. 82019Tight linkage of ginA and a putative regulatory gene in Rhizobium leguminosarum
Colonna-Romano, S. ; Riccio, A. ; Guida, M. ; Defez, R. ; Lamberti, A. ; Iaccarino, M. ; Arnold, Walter ; Priefer, Ursula B. ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 15 H. 5, S. 1951-19641987EMMA 2-A MAGE-compliant system for the collaborative analysis and integration of microarray data
Dondrup, Michael ; Albaum, Stefan ; Griebel, Thasso ; Henckel, Kolja ; Jünemann, Sebastian ; Kahlke, Tim ; Kleindt, Christiane Katja ; Kuester, Helge ; Linke, Burkhard ; Mertens, Dominik ; Mittard-Runte, Virginie ; Neuweger, Heiko ; Runte, Kai J. ; Tauch, Andreas ; Tille, Felix ; Pühler, Alfred ; Goesmann, AlexanderIn: BMC Bioinformatics, Jg. 10 H. 12009Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence [...]
Eikmeyer, Felix Gregor ; Rademacher, Antje ; Hanreich, Angelika ; Hennig, Magdalena ; Jaenicke, Sebastian ; Maus, Irena ; Wibberg, Daniel ; Zakrzewski, Martha ; Pühler, Alfred ; Klocke, Michael ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 6 H. 12013The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Borde [...]
Gross, Roy ; Guzman, Carlos A. ; Sebaihia, Mohammed ; Martins dos Santos, Vítor A. P. ; Pieper, Dietmar H. ; Koebnik, Ralf ; Lechner, Melanie ; Bartels, Daniela ; Buhrmester, Jens ; Choudhuri, Jomuna V. ; Ebensen, Thomas ; Gaigalat, Lars ; Herrmann, Stefanie ; Khachane, Amit N. ; Larisch, Christof ; Link, Stefanie ; Linke, Burkhard ; Meyer, Folker ; Mormann, Sascha ; Nakunst, Diana [...]In: BMC Genomics, Jg. 9 H. 12008Organization and partial sequence of a DNA region of the Rhizobium leguminosarum symbiotic plasmid pRL6JI containing the genes fixABC, nifA, nifB and a [...]
Grönger, Petra ; Manian, Sundaram S. ; Reiländer, Helmut ; O´Connell, Michael ; Priefer, Ursula B. ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 15 H. 1, S. 31-491987Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy
Hansmeier, Nicole ; Bartels, Frank Wilco ; Ros, Robert ; Anselmetti, Dario ; Tauch, Andreas ; Pühler, Alfred ; Kalinowski, JörnIn: J Biotechnol, Jg. 112 H. 1-2, S. 177-1932004Absence of intrinsic electric conductivity in single dsDNA molecules
Kleine, Hermann ; Wilke, Ralf ; Pelargus, Christoph ; Rott, Karsten ; Pühler, Alfred ; Reiss, Günter ; Ros, Robert ; Anselmetti, DarioIn: Journal of Biotechnology, Jg. 112 H. 1-2, S. 91-952004Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed [...]
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Jg. 15 H. 12020Comprehensive discovery and characterization of small RNAs in Corynebacterium glutamicum ATCC 13032
Mentz, Almut ; Neshat, Armin ; Pfeifer-Sancar, Katharina ; Pühler, Alfred ; Rückert, Christian ; Kalinowski, JörnIn: BMC Genomics, Jg. 14 H. 12013GenDB - an open source genome annotation system for prokaryote genomes
Meyer, Folker ; Goesmann, Alexander ; McHardy, Alice C. ; Bartels, Daniela ; Bekel, Thomas ; Clausen, Jörn ; Kalinowski, Jörn ; Linke, Burkhard ; Rupp, Oliver ; Giegerich, Robert ; Pühler, AlfredIn: Nucleic Acids Research, Jg. 31 H. 8, S. 2187-21952003Random mutagenesis in Corynebacterium glutamicum ATCC 13032 using an IS6100-based transposon vector identified the last unknown gene in the histidine biosynthesis [...]
Mormann, Sascha ; Lömker, Alexander ; Rückert, Christian ; Gaigalat, Lars ; Tauch, Andreas ; Pühler, Alfred ; Kalinowski, JörnIn: BMC Genomics, Jg. 7 H. 12006CoryneCenter: an online resource for the integrated analysis of corynebacterial genome and transcriptome data
Neuweger, Heiko ; Baumbach, Jan ; Albaum, Stefan ; Bekel, Thomas ; Dondrup, Michael ; Hüser, Andrea T. ; Kalinowski, Jörn ; Oehm, Sebastian ; Pühler, Alfred ; Rahmann, Sven ; Weile, Jochen ; Goesmann, AlexanderIn: BMC Systems Biology, Jg. 1 H. 12007Single molecule force spectroscopy on ligand-DNA complexes: from molecular binding mechanisms to biosensor applications
Ros, Robert ; Eckel, Rainer ; Bartels, Frank Wilco ; Sischka, Andy ; Baumgarth, Birgit ; Wilking, Sven David ; Pühler, Alfred ; Sewald, Norbert ; Becker, Anke ; Anselmetti, DarioIn: Journal of Biotechnology, Jg. 112 H. 1-2, S. 5-122004Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction
Rückert, Christian ; Koch, DJ ; Rey, DA ; Albersmeier, Andreas ; Mormann, S ; Pühler, Alfred ; Kalinowski, JörnIn: BMC Genomics, Jg. 6 H. 12005The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability [...]
Rückert, Christian ; Milse, Johanna ; Albersmeier, Andreas ; Koch, Daniel J. ; Pühler, Alfred ; Kalinowski, JörnIn: BMC GENOMICS, Jg. 9 H. 1, S. 483 ff.2008pSETT4, an Improved φC31-Based Integrative Vector System for Actinoplanes sp. SE50/110
Schaffert, Lena ; Jacob, Lucas ; Schneiker-Bekel, Susanne ; Persicke, Marcus ; März, Camilla ; Rückert, Christian ; Pühler, Alfred ; Kalinowski, JörnIn: Microbiology Resource Announcements, Jg. 9 H. 392020Evaluation of vector systems and promoters for overexpression of the acarbose biosynthesis gene acbC in Actinoplanes sp. SE50/110
Schaffert, Lena ; März, Camilla ; Burkhardt, Lisa ; Droste, Julian ; Brandt, David ; Busche, Tobias ; Rosen, Winfried ; Schneiker-Bekel, Susanne ; Persicke, Marcus ; Pühler, Alfred ; Kalinowski, JörnIn: Microbial Cell Factories, Jg. 18 H. 12019Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110
Schaffert, Lena ; Schneiker-Bekel, Susanne ; Gierhake, Jessica ; Droste, Julian ; Persicke, Marcus ; Rosen, Winfried ; Pühler, Alfred ; Kalinowski, JörnIn: Applied Microbiology and Biotechnology, Jg. 104, S. 5395–5408 ff.2020