Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, AlexanderIn: GigaScience, Jg. 4 H. 12015Exopolysaccharide Characterization of Rhizobium favelukesii LPU83 and Its Role in the Symbiosis With Alfalfa
Castellani, Lucas G. ; Luchetti, Abril ; Nilsson, Juliet F. ; Pérez-Giménez, Julieta ; Wegener, Caren ; Schlüter, Andreas ; Pühler, Alfred ; Lagares, Antonio ; Brom, Susana ; Pistorio, Mariano ; Niehaus, Karsten ; Torres Tejerizo, Gonzalo A.In: Frontiers in Plant Science, Jg. 122021Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing
Eikmeyer, Felix Gregor ; Heinl, Stefan ; Marx, Hans ; Pühler, Alfred ; Grabherr, Reingard ; Schlüter, AndreasIn: PLoS ONE, Jg. 10 H. 72015Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence [...]
Eikmeyer, Felix Gregor ; Rademacher, Antje ; Hanreich, Angelika ; Hennig, Magdalena ; Jaenicke, Sebastian ; Maus, Irena ; Wibberg, Daniel ; Zakrzewski, Martha ; Pühler, Alfred ; Klocke, Michael ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 6 H. 12013Indicative Marker Microbiome Structures Deduced from the Taxonomic Inventory of 67 Full-Scale Anaerobic Digesters of 49 Agricultural Biogas Plants
Hassa, Julia ; Klang, Johanna ; Benndorf, Dirk ; Pohl, Marcel ; Hülsemann, Benedikt ; Mächtig, Torsten ; Effenberger, Mathias ; Pühler, Alfred ; Schlüter, Andreas ; Theuerl, SusanneIn: Microorganisms, Jg. 9 H. 72021Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas [...]
Hassa, Julia ; Wibberg, Daniel ; Maus, Irena ; Pühler, Alfred ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 12020Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 4, S. e00687-162016Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 3, S. e00609-162016Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn, Thomas ; Wibberg, Daniel ; Maus, Irena ; Winkler, Anika ; Nordmann, Patrice ; Pühler, Alfred ; Poirel, Laurent ; Schlüter, AndreasIn: Genome Announcements, Jg. 3 H. 52015Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole [...]
Kröber, Magdalena ; Wibberg, Daniel ; Grosch, Rita ; Eikmeyer, Felix Gregor ; Verwaaijen, Bart ; Chowdhury, Soumitra P. ; Hartmann, Anton ; Pühler, Alfred ; Schlüter, AndreasIn: Frontiers in Microbiology, Jg. 52014Codon Usage Heterogeneity in the Multipartite Prokaryote Genome. Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ance [...]
López, J. L. ; Lozano, M. J. ; Lagares, A. ; Fabre, M. L. ; Draghi, W. O. ; Del Papa, M. F. ; Pistorio, M. ; Becker, A. ; Wibberg, Daniel ; Schlüter, Andreas ; Pühler, Alfred ; Blom, J. ; Goesmann, A. ; Lagares, A.In: mBio, Jg. 10 H. 32019Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Jg. 10 H. 12017Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis
Maus, Irena ; Kim, Yong Sung ; Wibberg, Daniel ; Stolze, Yvonne ; Off, Sandra ; Antonczyk, Sebastian ; Pühler, Alfred ; Scherer, Paul ; Schlüter, AndreasIn: Journal of Microbiology and Biotechnology, Jg. 27 H. 2, S. 321-3342017Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed [...]
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Jg. 15 H. 12020The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Maus, Irena ; Tubbesing, Tom Jonas ; Wibberg, Daniel ; Heyer, Robert ; Hassa, Julia ; Tomazetto, Geizecler ; Huang, Liren ; Bunk, Boyke ; Spröer, Cathrin ; Benndorf, Dirk ; Zverlov, Vladimir ; Pühler, Alfred ; Klocke, Michael ; Sczyrba, Alexander ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 122020Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Pühler, Alfred ; Schnürer, Anna ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 32016Effect of Long-Term Farming Practices on Agricultural Soil Microbiome Members Represented by Metagenomically Assembled Genomes (MAGs) and Their Predicted [...]
Nelkner, Johanna ; Henke, Christian ; Lin, Timo Wentong ; Pätzold, Wiebke ; Hassa, Julia ; Jaenicke, Sebastian ; Grosch, Rita ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Genes, Jg. 10 H. 62019Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative [...]
Nelkner, Johanna ; Tejerizo, Gonzalo Torres ; Hassa, Julia ; Lin, Timo Wentong ; Witte, Julian ; Verwaaijen, Bart ; Winkler, Anika ; Bunk, Boyke ; Spröer, Cathrin ; Overmann, Jörg ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Genes, Jg. 10 H. 82019Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas p [...]
Stolze, Yvonne ; Bremges, Andreas ; Rumming, Madis ; Henke, Christian ; Maus, Irena ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 9 H. 12016Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditi [...]
Stolze, Yvonne ; Zakrzewski, Martha ; Maus, Irena ; Eikmeyer, Felix Gregor ; Jaenicke, Sebastian ; Rottmann, Nils ; Siebner, Clemens ; Pühler, Alfred ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 8 H. 12015